1k2z
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1k2z.gif|left|200px]] | + | [[Image:1k2z.gif|left|200px]] |
| - | + | ||
| - | '''The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin.''' | + | {{Structure |
| + | |PDB= 1k2z |SIZE=350|CAPTION= <scene name='initialview01'>1k2z</scene>, resolution 2.38Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=DMY:DISTAMYCIN A'>DMY</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin.''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1K2Z is a [ | + | 1K2Z is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2Z OCA]. |
==Reference== | ==Reference== | ||
| - | Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG)., Uytterhoeven K, Sponer J, Van Meervelt L, Eur J Biochem. 2002 Jun;269(12):2868-77. PMID:[http:// | + | Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG)., Uytterhoeven K, Sponer J, Van Meervelt L, Eur J Biochem. 2002 Jun;269(12):2868-77. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12071949 12071949] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Meervelt, L Van.]] | [[Category: Meervelt, L Van.]] | ||
| Line 16: | Line 25: | ||
[[Category: DMY]] | [[Category: DMY]] | ||
[[Category: b-dna double helix]] | [[Category: b-dna double helix]] | ||
| - | [[Category: base | + | [[Category: base triplet]] |
[[Category: distamycin]] | [[Category: distamycin]] | ||
[[Category: drug]] | [[Category: drug]] | ||
[[Category: minor groove binding]] | [[Category: minor groove binding]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:11:51 2008'' |
Revision as of 10:11, 20 March 2008
| |||||||
| , resolution 2.38Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
The Crystal Structure of d(GGCCAATTGG) Complexed with Distamycin.
Overview
Single-crystal X-ray structure determinations of the complex between the minor-groove binder distamycin and d(GGCCAATTGG) reveal two 1 : 1 binding modes which differ in the orientation of the drug molecule in the minor groove. The two crystals were grown from different crystallization conditions and found to diffract to 2.38 and 1.85 A, respectively. The structures were refined to completion using SHELXL-93, resulting in a residual R factor of 20.30% for the 2.38-A resolution structure (including 46 water molecules) and 19.74% for the 1.85-A resolution structure (including 74 water molecules). In both orientations, bifurcated hydrogen bonds are formed between the amide nitrogen atoms of the drug and AT base pairs. With a binding site of at least five base pairs, close contacts between the terminal distamycin atoms and guanine amino groups are inevitable. The detailed nature of several of these interactions was further investigated by ab initio quantum chemical methods.
About this Structure
1K2Z is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG)., Uytterhoeven K, Sponer J, Van Meervelt L, Eur J Biochem. 2002 Jun;269(12):2868-77. PMID:12071949
Page seeded by OCA on Thu Mar 20 12:11:51 2008
