Sandbox 33
From Proteopedia
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==Adenylate Kinase== | ==Adenylate Kinase== | ||
| - | <scene name='Sandbox_33/1ake/1'> | + | <scene name='Sandbox_33/1ake/1'>Adenylate kinase</scene> (also known as 1AKE) is a phosphotransferase enzyme that catalyzes the interconversion of adenine nucleotides. Adenylate Kinase thus plays an important role in cellular metabolism. The images of Adenylate Kinase in this sandbox are from Yersinia Pestis, or yeast. |
==Secondary Structure== | ==Secondary Structure== | ||
| - | <scene name='Sandbox_33/Secondary_structure_colored/2'>Adenylate Kinase</scene> the helices are shown in hot pink and the beta sheets are shown in a purple, other features?? | ||
| - | + | The <scene name='Sandbox_33/Secondary_structure_colored/2'>secondary structure</scene> consists of 214 amino acids which form 12 alpha helices and 7 beta sheets. The helices are displayed in hot pink and the anti-parallel beta sheets are of adenylate kinase are shown in purple. The secondary structure is held together by <scene name='Sandbox_33/Hbond/1'>hydrogen bonding</scene> (depicted by black lines). | |
| - | the helices are shown in hot pink and the beta sheets are shown in a purple, other features?? | ||
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| - | <scene name='Sandbox_33/Hbond/1'>hbond</scene> In the text around your green link, make sure you talk about the hydrogen bonds. Seeing the hydrogen bonds on the beta sheets should also help you to decide if they are parallel or anti-parallel, and you should comment on that as well. | ||
<scene name='Sandbox_33/Stickwire_hydrophobic/1'>hydrophobic residues</scene> describe representation | <scene name='Sandbox_33/Stickwire_hydrophobic/1'>hydrophobic residues</scene> describe representation | ||
Revision as of 23:16, 19 October 2012
| Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013. |
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Contents |
Adenylate Kinase
(also known as 1AKE) is a phosphotransferase enzyme that catalyzes the interconversion of adenine nucleotides. Adenylate Kinase thus plays an important role in cellular metabolism. The images of Adenylate Kinase in this sandbox are from Yersinia Pestis, or yeast.
Secondary Structure
The consists of 214 amino acids which form 12 alpha helices and 7 beta sheets. The helices are displayed in hot pink and the anti-parallel beta sheets are of adenylate kinase are shown in purple. The secondary structure is held together by (depicted by black lines).
describe representation
describe representation polar and charged residues
Solvent
write something about where the waters are, and arent
ligand highlighted brown
Enzyme Activity
When you add the green link to the top part of the page, make sure you say something about what kinds of side-chains interact with the non-hydrolysable substrate, and if that makes sense.
catalytic residues, check w/ dr tims to see if i have selected the rite ones
