3ygs

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[[Image:3ygs.png|left|200px]]
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==APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9==
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<StructureSection load='3ygs' size='340' side='right' caption='[[3ygs]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3ygs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3YGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3YGS FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ygs|2ygs]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ygs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ygs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ygs RCSB], [http://www.ebi.ac.uk/pdbsum/3ygs PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/3ygs_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Caspase-9-mediated apoptosis (programmed cell death) plays a central role in the development and homeostasis of all multicellular organisms. Mature caspase-9 is derived from its procaspase precursor as a result of recruitment by the activating factor Apaf-1. The crystal structures of the caspase-recruitment domain of Apaf-1 by itself and in complex with the prodomain of procaspase-9 have been determined at 1.6 and 2.5 A resolution, respectively. These structures and other evidence reveal that each molecule of Apaf-1 interacts with a molecule of procaspase-9 through two highly charged and complementary surfaces formed by non-conserved residues; these surfaces determine recognition specificity through networks of intermolecular hydrogen bonds and van der Waals interactions. Mutation of the important interface residues in procaspase-9 or Apaf-1 prevents or reduces activation of procaspase-9 in a cell-free system. Wild-type, but not mutant, prodomains of caspase-9 completely inhibit catalytic processing of procaspase-9. Furthermore, analysis of homologues from Caenorhabditis elegans indicates that recruitment of CED-3 by CED-4 is probably mediated by the same set of conserved structural motifs, with a corresponding change in the specificity-determining residues.
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{{STRUCTURE_3ygs| PDB=3ygs | SCENE= }}
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Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1.,Qin H, Srinivasula SM, Wu G, Fernandes-Alnemri T, Alnemri ES, Shi Y Nature. 1999 Jun 10;399(6736):549-57. PMID:10376594<ref>PMID:10376594</ref>
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===APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_10376594}}
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==About this Structure==
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[[3ygs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3YGS OCA].
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==See Also==
==See Also==
*[[Caspase|Caspase]]
*[[Caspase|Caspase]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:010376594</ref><ref group="xtra">PMID:011742118</ref><ref group="xtra">PMID:020844150</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Alnemri, E.]]
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[[Category: Alnemri, E]]
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[[Category: Fernandes-Alnemri, T.]]
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[[Category: Fernandes-Alnemri, T]]
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[[Category: Qin, H.]]
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[[Category: Qin, H]]
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[[Category: Shi, Y.]]
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[[Category: Shi, Y]]
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[[Category: Srinivasula, S.]]
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[[Category: Srinivasula, S]]
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[[Category: Wu, G.]]
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[[Category: Wu, G]]
[[Category: Apoptosis]]
[[Category: Apoptosis]]
[[Category: Caspase activation]]
[[Category: Caspase activation]]
[[Category: Caspase recruitment]]
[[Category: Caspase recruitment]]
[[Category: Recognition complex]]
[[Category: Recognition complex]]

Revision as of 17:51, 9 December 2014

APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9

3ygs, resolution 2.50Å

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