1lc4
From Proteopedia
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| - | [[Image:1lc4.gif|left|200px]] | + | [[Image:1lc4.gif|left|200px]] |
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| - | '''Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site''' | + | {{Structure |
| + | |PDB= 1lc4 |SIZE=350|CAPTION= <scene name='initialview01'>1lc4</scene>, resolution 2.54Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=TOY:TOBRAMYCIN'>TOY</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1LC4 is a [ | + | 1LC4 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LC4 OCA]. |
==Reference== | ==Reference== | ||
| - | Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site., Vicens Q, Westhof E, Chem Biol. 2002 Jun;9(6):747-55. PMID:[http:// | + | Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site., Vicens Q, Westhof E, Chem Biol. 2002 Jun;9(6):747-55. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12079787 12079787] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Vicens, Q.]] | [[Category: Vicens, Q.]] | ||
[[Category: Westhof, E.]] | [[Category: Westhof, E.]] | ||
[[Category: TOY]] | [[Category: TOY]] | ||
| - | [[Category: adenine | + | [[Category: adenine bulge]] |
[[Category: antibiotic-rna complex]] | [[Category: antibiotic-rna complex]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:29:09 2008'' |
Revision as of 10:29, 20 March 2008
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| , resolution 2.54Å | |||||||
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| Ligands: | |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site
Overview
Aminoglycoside antibiotics target the decoding aminoacyl site (A site) on the 16S ribosomal RNA and induce miscoding during translation. Here, we present the crystal structure, at 2.54 A resolution, of an RNA oligonucleotide containing the A site sequence complexed to the 4,6-disubstituted 2-deoxystreptamine aminoglycoside tobramycin. The three aminosugar rings making up tobramycin interact with the deep-groove atoms directly or via water molecules and stabilize a fully bulged-out conformation of adenines A(1492) and A(1493). The comparison between this structure and the one previously solved in the presence of paromomycin confirms the importance of the functional groups on the common neamine part of these two antibiotics for binding to RNA. Furthermore, the analysis of the present structure provides a molecular explanation to some of the resistance mechanisms that have spread among bacteria and rendered aminoglycoside antibiotics inefficient.
About this Structure
1LC4 is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site., Vicens Q, Westhof E, Chem Biol. 2002 Jun;9(6):747-55. PMID:12079787
Page seeded by OCA on Thu Mar 20 12:29:09 2008
