1lvj
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1lvj.gif|left|200px]] | + | [[Image:1lvj.gif|left|200px]] |
| - | + | ||
| - | '''STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING''' | + | {{Structure |
| + | |PDB= 1lvj |SIZE=350|CAPTION= <scene name='initialview01'>1lvj</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=PMZ:1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE'>PMZ</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1LVJ is a [ | + | 1LVJ is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LVJ OCA]. |
==Reference== | ==Reference== | ||
| - | Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening., Du Z, Lind KE, James TL, Chem Biol. 2002 Jun;9(6):707-12. PMID:[http:// | + | Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening., Du Z, Lind KE, James TL, Chem Biol. 2002 Jun;9(6):707-12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12079782 12079782] |
[[Category: Human immunodeficiency virus 1]] | [[Category: Human immunodeficiency virus 1]] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
| Line 21: | Line 30: | ||
[[Category: transcriptional activation]] | [[Category: transcriptional activation]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:35:44 2008'' |
Revision as of 10:35, 20 March 2008
| |||||||
| Ligands: | |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING
Overview
HIV-1 TAR RNA functions critically in viral replication by binding the transactivating regulatory protein Tat. We recently identified several compounds that experimentally inhibit the Tat-TAR interaction completely at a 100 nM concentration. We used computational screening of the 181,000-compound Available Chemicals Directory against the three-dimensional structure of TAR [1]. Here we report the NMR-derived structure of TAR complexed with acetylpromazine. This structure represents a new class of compounds with good bioavailability and low toxicity that bind with high affinity to TAR. NMR data unambiguously show that acetylpromazine binds only to the unique 5' bulge site to which the Tat protein binds. Specificity and affinity of binding are conferred primarily by a network of base stacking and hydrophobic interactions. Acetylpromazine alters the structure of free TAR less than Tat peptides and neomycin do.
About this Structure
1LVJ is a Protein complex structure of sequences from Human immunodeficiency virus 1. Full crystallographic information is available from OCA.
Reference
Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening., Du Z, Lind KE, James TL, Chem Biol. 2002 Jun;9(6):707-12. PMID:12079782
Page seeded by OCA on Thu Mar 20 12:35:44 2008
