3o78
From Proteopedia
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- | [[ | + | ==The structure of Ca2+ Sensor (Case-12)== |
+ | <StructureSection load='3o78' size='340' side='right' caption='[[3o78]], [[Resolution|resolution]] 2.60Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3o78]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O78 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3O78 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | ||
+ | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3o77|3o77]], [[3ek4|3ek4]], [[3ek7|3ek7]], [[3ek8|3ek8]], [[3ekh|3ekh]], [[3ekj|3ekj]], [[3evp|3evp]], [[3evr|3evr]], [[3evu|3evu]], [[3evv|3evv]]</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3o78 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o78 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3o78 RCSB], [http://www.ebi.ac.uk/pdbsum/3o78 PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Here we report the first crystal structure of a high-contrast genetically encoded circularly permuted green fluorescent protein (cpGFP)-based Ca(2+) sensor, Case16, in the presence of a low Ca(2+) concentration. The structure reveals the positioning of the chromophore within Case16 at the first stage of the Ca(2+)-dependent response when only two out of four Ca(2+)-binding pockets of calmodulin (CaM) are occupied with Ca(2+) ions. In such a "half Ca(2+)-bound state", Case16 is characterized by an incomplete interaction between its CaM-/M13-domains. We also report the crystal structure of the related Ca(2+) sensor Case12 at saturating Ca(2+) concentration. Based on this structure, we postulate that cpGFP-based Ca(2+) sensors can form non-functional homodimers where the CaM-domain of one sensor molecule binds symmetrically to the M13-peptide of the partner sensor molecule. Case12 and Case16 behavior upon addition of high concentrations of free CaM or M13-peptide reveals that the latter effectively blocks the fluorescent response of the sensor. We speculate that the demonstrated intermolecular interaction with endogenous substrates and homodimerization can impede proper functioning of this type of Ca(2+) sensors in living cells. | ||
- | + | The structure of Ca2+ sensor Case16 reveals the mechanism of reaction to low Ca2+ concentrations.,Leder L, Stark W, Freuler F, Marsh M, Meyerhofer M, Stettler T, Mayr LM, Britanova OV, Strukova LA, Chudakov DM, Souslova EA Sensors (Basel). 2010;10(9):8143-60. Epub 2010 Aug 30. PMID:22163646<ref>PMID:22163646</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
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==See Also== | ==See Also== | ||
- | *[[Alyssa Marsico/Sandbox 1|Alyssa Marsico/Sandbox 1]] | ||
*[[Calmodulin|Calmodulin]] | *[[Calmodulin|Calmodulin]] | ||
- | *[[Devon McCarthy/Sandbox 1|Devon McCarthy/Sandbox 1]] | ||
*[[Green Fluorescent Protein|Green Fluorescent Protein]] | *[[Green Fluorescent Protein|Green Fluorescent Protein]] | ||
- | + | == References == | |
- | + | <references/> | |
- | + | __TOC__ | |
- | == | + | </StructureSection> |
- | < | + | |
[[Category: Aequorea victoria]] | [[Category: Aequorea victoria]] | ||
- | [[Category: Britanova, O V | + | [[Category: Britanova, O V]] |
- | [[Category: Chudakov, D M | + | [[Category: Chudakov, D M]] |
- | [[Category: Freuler, F | + | [[Category: Freuler, F]] |
- | [[Category: Leder, L | + | [[Category: Leder, L]] |
- | [[Category: Marsh, M | + | [[Category: Marsh, M]] |
- | [[Category: Mayr, L M | + | [[Category: Mayr, L M]] |
- | [[Category: Meyerhofer, M | + | [[Category: Meyerhofer, M]] |
- | [[Category: Stark, W | + | [[Category: Stark, W]] |
- | [[Category: Stettler, T | + | [[Category: Stettler, T]] |
- | [[Category: Strukova, L A | + | [[Category: Strukova, L A]] |
[[Category: Calcium sensor]] | [[Category: Calcium sensor]] | ||
[[Category: Circular permutated green fluorescent protein]] | [[Category: Circular permutated green fluorescent protein]] |
Revision as of 18:09, 21 December 2014
The structure of Ca2+ Sensor (Case-12)
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Categories: Aequorea victoria | Britanova, O V | Chudakov, D M | Freuler, F | Leder, L | Marsh, M | Mayr, L M | Meyerhofer, M | Stark, W | Stettler, T | Strukova, L A | Calcium sensor | Circular permutated green fluorescent protein | Fluorescent protein | Genetically encoded | Gfp calmodulin m13-peptide | Gyg naturally modified tripeptide acts as chromophore | M13-peptide