3m6l
From Proteopedia
(Difference between revisions)
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| - | + | ==Crystal structure of transketolase in complex with thiamine diphosphate, ribose-5-phosphate and calcium ion== | |
| - | + | <StructureSection load='3m6l' size='340' side='right' caption='[[3m6l]], [[Resolution|resolution]] 1.59Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3m6l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M6L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M6L FirstGlance]. <br> | |
| - | + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=R5P:RIBOSE-5-PHOSPHATE'>R5P</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene><br> | |
| - | + | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3m34|3m34]], [[3l84|3l84]]</td></tr> | |
| - | == | + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tkt, Cj1645 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr> |
| - | [[3m6l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Transketolase Transketolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.1 2.2.1.1] </span></td></tr> |
| + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m6l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m6l RCSB], [http://www.ebi.ac.uk/pdbsum/3m6l PDBsum]</span></td></tr> | ||
| + | <table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m6/3m6l_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Transketolase|Transketolase]] | *[[Transketolase|Transketolase]] | ||
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Camje]] | ||
[[Category: Transketolase]] | [[Category: Transketolase]] | ||
[[Category: Anderson, W.]] | [[Category: Anderson, W.]] | ||
| - | [[Category: | + | [[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]] |
[[Category: Joachimiak, A.]] | [[Category: Joachimiak, A.]] | ||
[[Category: Makowska-Grzyska, M.]] | [[Category: Makowska-Grzyska, M.]] | ||
Revision as of 22:02, 1 October 2014
Crystal structure of transketolase in complex with thiamine diphosphate, ribose-5-phosphate and calcium ion
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Categories: Camje | Transketolase | Anderson, W. | CSGID, Center for Structural Genomics of Infectious Diseases. | Joachimiak, A. | Makowska-Grzyska, M. | Maltseva, N. | Nocek, B. | Calcium binding | Center for structural genomics of infectious disease | Csgid | Niaid | Ribose-5-phosphate bound | Structural genomic | Thiamine pyrophosphate | Transferase
