2vly

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[[Image:2vly.png|left|200px]]
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==CRYSTAL STRUCTURE OF MYOGLOBIN COMPOUND III (RADIATION-INDUCED)==
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<StructureSection load='2vly' size='340' side='right' caption='[[2vly]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2vly]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VLY FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2in4|2in4]], [[1bje|1bje]], [[1hsy|1hsy]], [[1rse|1rse]], [[2vm0|2vm0]], [[2frj|2frj]], [[1wla|1wla]], [[1ymc|1ymc]], [[1nz4|1nz4]], [[1dwr|1dwr]], [[1ymb|1ymb]], [[2frf|2frf]], [[2v1h|2v1h]], [[2fri|2fri]], [[1hrm|1hrm]], [[1azi|1azi]], [[1nz3|1nz3]], [[2vlx|2vlx]], [[2v1f|2v1f]], [[2v1i|2v1i]], [[1dws|1dws]], [[1npg|1npg]], [[2v1g|2v1g]], [[1nz5|1nz5]], [[2v1k|2v1k]], [[1npf|1npf]], [[1nz2|1nz2]], [[1dwt|1dwt]], [[2frk|2frk]], [[1xch|1xch]], [[1yma|1yma]], [[1gjn|1gjn]], [[2vlz|2vlz]], [[2v1j|2v1j]], [[2v1e|2v1e]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vly OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vly RCSB], [http://www.ebi.ac.uk/pdbsum/2vly PDBsum]</span></td></tr>
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<table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/2vly_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Myoglobin has the ability to react with hydrogen peroxide, generating high-valent complexes similar to peroxidases (compounds I and II), and in the presence of excess hydrogen peroxide a third intermediate, compound III, with an oxymyoglobin-type structure is generated from compound II. The compound III is, however, easily one-electron reduced to peroxymyoglobin by synchrotron radiation during crystallographic data collection. We have generated and solved the 1.30 A (1 A=0.1 nm) resolution crystal structure of the peroxymyoglobin intermediate, which is isoelectric to compound 0 and has a Fe-O distance of 1.8 A and O-O bond of 1.3 A in accordance with a Fe(II)-O-O- (or Fe(III)-O-O2-) structure. The generation of the peroxy intermediate through reduction of compound III by X-rays shows the importance of using single-crystal microspectrophotometry when doing crystallography on metalloproteins. After having collected crystallographic data on a peroxy-generated myoglobin crystal, we were able (by a short annealing) to break the O-O bond leading to formation of compound II. These results indicate that the cryoradiolytic-generated peroxymyoglobin is biologically relevant through its conversion into compound II upon heating. Additionally, we have observed that the Xe1 site is occupied by a water molecule, which might be the leaving group in the compound II to compound III reaction.
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{{STRUCTURE_2vly| PDB=2vly | SCENE= }}
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The crystal structure of peroxymyoglobin generated through cryoradiolytic reduction of myoglobin compound III during data collection.,Hersleth HP, Hsiao YW, Ryde U, Gorbitz CH, Andersson KK Biochem J. 2008 Jun 1;412(2):257-64. PMID:18215120<ref>PMID:18215120</ref>
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===CRYSTAL STRUCTURE OF MYOGLOBIN COMPOUND III (RADIATION-INDUCED)===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_18215120}}
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==About this Structure==
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[[2vly]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLY OCA].
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==See Also==
==See Also==
*[[Myoglobin|Myoglobin]]
*[[Myoglobin|Myoglobin]]
*[[Phosphoinositide 3-Kinases|Phosphoinositide 3-Kinases]]
*[[Phosphoinositide 3-Kinases|Phosphoinositide 3-Kinases]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018215120</ref><ref group="xtra">PMID:011935353</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Equus caballus]]
[[Category: Equus caballus]]
[[Category: Andersson, K K.]]
[[Category: Andersson, K K.]]

Revision as of 09:56, 29 September 2014

CRYSTAL STRUCTURE OF MYOGLOBIN COMPOUND III (RADIATION-INDUCED)

2vly, resolution 1.60Å

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