Josie N. Harmon/Sandbox Tutorial

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
== Xanthine Oxidase Biochemistry Tutorial ==
== Xanthine Oxidase Biochemistry Tutorial ==
-
The human diet introduces a large assortment of various new molecules into the body. These molecules are often degraded and used by the body to be later utilized as a source of metabolic energy. In other cirmcumstances the molecules can be broken down into components to be used by the body to build necessary proteins and nucleic acids. Lastly, any molecules that are remaining following the previous processes can be degraded for elimination. Xanthine oxidoreductase is considered to be the final stop for extra purine nucleotides, such as adenosine triphosphate (ATP)[[Image:ATP.png]]and guanosine triphosphate (GTP)[[Image:GTP.png]], in our cells. Inside the cells the enzyme takes on a role of purine degredation, where it is involved in the extrememly inportant catabolism of purines through a series of steps to yield uric acid which is ultimately excreted from the body.
+
The purpose of this tutorial is to explain the mechanism of the metabolic enzyme xanthine oxidoreductase.
<StructureSection load='1fiq' size='350' side='right' caption='Crystal Structure of Xanthine Oxidase from Bovine Milk (PDB entry [[1fiq]])' scene=''>
<StructureSection load='1fiq' size='350' side='right' caption='Crystal Structure of Xanthine Oxidase from Bovine Milk (PDB entry [[1fiq]])' scene=''>
== Xanthine Oxidoreductase ==
== Xanthine Oxidoreductase ==
-
Xanthine oxidoreductase is actualy considered to exists as two enzymes in one, one being xanthine oxidase and the other existing as xanthine dehydrogenase. When the enzyme was initially purified by scientists two different forms of the enzyme were found, where one uses nicotinamide adenine dinucleotide (NAD) and the other uses oxygen. The two forms were believed to be two different enzymes and were thus given two different names; however, upon further investigation into the amino acid sequence of the enzymes it was determined that the enzymes were actually the same. The two forms of the enzyme can differ in two ways:
+
Xanthine oxidoreductase is actualy considered to exist as two enzymes in one, one being xanthine oxidase and the other existing as xanthine dehydrogenase. When the enzyme was initially purified by scientists two different forms of the enzyme were found, where one uses nicotinamide adenine dinucleotide (NAD) and the other uses oxygen. The two forms were believed to exist as two different enzymes and were thus given two different names; however, upon further investigation into the amino acid sequence of the enzymes it was determined that the enzymes were actually the same. The two forms of the enzyme can differ in two ways:
-
1. There are several disulfide bridges within the oxidoreductase enzyme and if these bridges are left intact the enzyme acts as an oxidase, but if these bridges are cleaved the enzyme acts as the dehydrogenase.
+
1. Within the oxidoreductase enzyme there are multiple disulfide bridges. In the case that these bridges are left untouched the enzyme will then take on the characteristics to act as an oxidase, but in the event that these bridges are restricted the enzyme then acts as a dehydrogenase.
-
2. The oxidoreductase enzyme can be permanently cleaved by proteases so that it always acts in the oxidase form.
+
2. The oxidoreductase enzyme is permanently altered by proteases so that it will constantly utilized in the oxidase form.
 +
 
 +
== Mechanism of Action ==
 +
Xanthine oxidase is characterized as a molybdenum containing enzyme that catalyzes the hydroxylation of a sp2 hybrized carbon in a broad range of aromatic heterocycles and aldehydes. In eukaryotes xanthine oxidase exist as a homodimer with each monomer containing four redox-active sites. The crystal structure of the bovine xanthine oxidase complex contains two active sites with varying intrinsic activity. The crystalline structure of a xanthine oxidase monomer offers a better view of the active molybdenum center, the ferredoxin iron sulfur, Fe2S2, clusters, and FAD.
== Electron Extraction ==
== Electron Extraction ==
- 
One side of the xanthine oxidoreductase enzyme consists of an active site that includes a molybdenum atom which binds to a purine substrate and adds a hydroxyl group. During this process electrons are extracted and funneled from the active site through a string of iron-sulfur clusters to the opposing side of the enzyme. The opposing side then transfers the electrons to NAD or oxygen depending on the dehydrogenase or oxidase nature of the enzyme. One of the final steps in the electron transfer funnels electrons to a FAD group. The dehydrogenase form of the enzyme transfers these electrons to NAD, while the oxidase form blocks NAD through a loop of protein that covers the FAD molecule allowing smaller oxygen molecules to accept the electrons.
One side of the xanthine oxidoreductase enzyme consists of an active site that includes a molybdenum atom which binds to a purine substrate and adds a hydroxyl group. During this process electrons are extracted and funneled from the active site through a string of iron-sulfur clusters to the opposing side of the enzyme. The opposing side then transfers the electrons to NAD or oxygen depending on the dehydrogenase or oxidase nature of the enzyme. One of the final steps in the electron transfer funnels electrons to a FAD group. The dehydrogenase form of the enzyme transfers these electrons to NAD, while the oxidase form blocks NAD through a loop of protein that covers the FAD molecule allowing smaller oxygen molecules to accept the electrons.
- 
-
== Mechanism of Action ==
 
-
Xanthine oxidase is characterized as a molybdenum containing enzyme that catalyzes the hydroxylation of a sp2 hybrized carbon in a broad range of aromatic heterocycles and aldehydes. The crystal structure of the bovine xanthine oxidase complex contains two active sites with varying intrinsic activity. In eukaryotes xanthine oxidases exist as homodimers with each monomer containing four redox-active sites. The crystalline structure of a xanthine oxidase monomer offers a better view of the active molybdenum center, the ferredoxin iron sulfur, Fe2S2, clusters, and FAD.
 
== Metabolism ==
== Metabolism ==

Revision as of 16:24, 12 November 2012

Xanthine Oxidase Biochemistry Tutorial

The purpose of this tutorial is to explain the mechanism of the metabolic enzyme xanthine oxidoreductase.

Crystal Structure of Xanthine Oxidase from Bovine Milk (PDB entry 1fiq)

Drag the structure with the mouse to rotate

Image:Xanthine oxidase reaction.png

Proteopedia Page Contributors and Editors (what is this?)

Josie N. Harmon

Personal tools