4h75

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[[Image:4h75.png|left|200px]]
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==Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide==
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<StructureSection load='4h75' size='340' side='right' caption='[[4h75]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4h75]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H75 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPIN1, OCR, SPIN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h75 RCSB], [http://www.ebi.ac.uk/pdbsum/4h75 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recognition of methylated histone tail lysine residues by tudor domains plays important roles in epigenetic control of gene expression and DNA damage response. Previous studies revealed the binding of methyllysine in a cage of aromatic residues, but the molecular mechanism by which the sequence specificity for surrounding histone tail residues is achieved remains poorly understood. In the crystal structure of a trimethylated histone H3 lysine 4 (H3K4) peptide bound to the tudor-like domains of Spindlin1 presented here, an atypical mode of methyllysine recognition by an aromatic pocket of Spindlin1 is observed. Furthermore, the histone sequence is recognized in a distinct manner involving the amino terminus and a pair of arginine residues of histone H3, and disruption of the binding impaired stimulation of pre-RNA expression by Spindlin1. Our analysis demonstrates considerable diversities of methyllysine recognition and sequence-specific binding of histone tails by tudor domains, and the revelation furthers the understanding of tudor domain proteins in deciphering epigenetic marks on histone tails.
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{{STRUCTURE_4h75| PDB=4h75 | SCENE= }}
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Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1.,Yang N, Wang W, Wang Y, Wang M, Zhao Q, Rao Z, Zhu B, Xu RM Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17954-9. doi:, 10.1073/pnas.1208517109. Epub 2012 Oct 17. PMID:23077255<ref>PMID:23077255</ref>
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===Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_23077255}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[4h75]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H75 OCA].
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Rao, Z.]]
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[[Category: Rao, Z]]
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[[Category: Wang, M.]]
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[[Category: Wang, M]]
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[[Category: Wang, W.]]
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[[Category: Wang, W]]
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[[Category: Wang, Y.]]
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[[Category: Wang, Y]]
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[[Category: Xu, R M.]]
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[[Category: Xu, R M]]
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[[Category: Yang, N.]]
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[[Category: Yang, N]]
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[[Category: Zhao, Q.]]
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[[Category: Zhao, Q]]
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[[Category: Zhu, B.]]
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[[Category: Zhu, B]]
[[Category: Gene regulation]]
[[Category: Gene regulation]]
[[Category: H3k4me3 binding]]
[[Category: H3k4me3 binding]]
[[Category: Methylation]]
[[Category: Methylation]]
[[Category: Tudor domain]]
[[Category: Tudor domain]]

Revision as of 09:56, 10 December 2014

Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide

4h75, resolution 2.10Å

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