1rfr
From Proteopedia
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| - | [[Image:1rfr.gif|left|200px]] | + | [[Image:1rfr.gif|left|200px]] |
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| - | '''NMR structure of the 30mer stemloop-D of coxsackieviral RNA''' | + | {{Structure |
| + | |PDB= 1rfr |SIZE=350|CAPTION= <scene name='initialview01'>1rfr</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= 5'-nontranslated region ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12071 Human coxsackievirus B1]) | ||
| + | }} | ||
| + | |||
| + | '''NMR structure of the 30mer stemloop-D of coxsackieviral RNA''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1RFR is a [ | + | 1RFR is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Human_coxsackievirus_b1 Human coxsackievirus b1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFR OCA]. |
==Reference== | ==Reference== | ||
| - | The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C., Ohlenschlager O, Wohnert J, Bucci E, Seitz S, Hafner S, Ramachandran R, Zell R, Gorlach M, Structure. 2004 Feb;12(2):237-48. PMID:[http:// | + | The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C., Ohlenschlager O, Wohnert J, Bucci E, Seitz S, Hafner S, Ramachandran R, Zell R, Gorlach M, Structure. 2004 Feb;12(2):237-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14962384 14962384] |
[[Category: Human coxsackievirus b1]] | [[Category: Human coxsackievirus b1]] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
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[[Category: Wohnert, J.]] | [[Category: Wohnert, J.]] | ||
[[Category: Zell, R.]] | [[Category: Zell, R.]] | ||
| - | [[Category: a-form helix | + | [[Category: a-form helix stem]] |
[[Category: base-paired u:u-c:u-u:u mismatch]] | [[Category: base-paired u:u-c:u-u:u mismatch]] | ||
[[Category: loop with conformation similar to stable uncg-tetraloops and u:g closing base pair]] | [[Category: loop with conformation similar to stable uncg-tetraloops and u:g closing base pair]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:51:01 2008'' |
Revision as of 11:51, 20 March 2008
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| Gene: | 5'-nontranslated region (Human coxsackievirus B1) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
NMR structure of the 30mer stemloop-D of coxsackieviral RNA
Overview
Stemloop D (SLD) of the 5' cloverleaf RNA is the cognate ligand of the coxsackievirus B3 (CVB3) 3C proteinase (3Cpro). Both are indispensable components of the viral replication initiation complex. SLD is a structurally autonomous subunit of the 5' cloverleaf. The SLD structure was solved by NMR spectroscopy to an rms deviation of 0.66 A (all heavy atoms). SLD contains a novel triple pyrimidine mismatch motif with a central Watson-Crick type C:U pair. SLD is capped by an apical uCACGg tetraloop adopting a structure highly similar to stable cUNCGg tetraloops. Binding of CVB3 3Cpro induces changes in NMR spectra for nucleotides adjacent to the triple pyrimidine mismatch and of the tetraloop implying them as sites of specific SLD:3Cpro interaction. The binding of 3Cpro to SLD requires the integrity of those structural elements, strongly suggesting that 3Cpro recognizes a structural motif instead of a specific sequence.
About this Structure
1RFR is a Protein complex structure of sequences from Human coxsackievirus b1. Full crystallographic information is available from OCA.
Reference
The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C., Ohlenschlager O, Wohnert J, Bucci E, Seitz S, Hafner S, Ramachandran R, Zell R, Gorlach M, Structure. 2004 Feb;12(2):237-48. PMID:14962384
Page seeded by OCA on Thu Mar 20 13:51:01 2008
Categories: Human coxsackievirus b1 | Protein complex | Bucci, E. | Gorlach, M. | Hafner, S. | Ohlenschlager, O. | Ramachandran, R. | Seitz, S. | Wohnert, J. | Zell, R. | A-form helix stem | Base-paired u:u-c:u-u:u mismatch | Loop with conformation similar to stable uncg-tetraloops and u:g closing base pair
