1sdr
From Proteopedia
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| - | [[Image:1sdr.jpg|left|200px]] | + | [[Image:1sdr.jpg|left|200px]] |
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| - | '''CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE''' | + | {{Structure |
| + | |PDB= 1sdr |SIZE=350|CAPTION= <scene name='initialview01'>1sdr</scene>, resolution 2.600Å | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1SDR is a [ | + | 1SDR is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDR OCA]. |
==Reference== | ==Reference== | ||
| - | Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence., Schindelin H, Zhang M, Bald R, Furste JP, Erdmann VA, Heinemann U, J Mol Biol. 1995 Jun 9;249(3):595-603. PMID:[http:// | + | Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence., Schindelin H, Zhang M, Bald R, Furste JP, Erdmann VA, Heinemann U, J Mol Biol. 1995 Jun 9;249(3):595-603. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7540215 7540215] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Bald, R.]] | [[Category: Bald, R.]] | ||
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[[Category: double helix]] | [[Category: double helix]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:03:38 2008'' |
Revision as of 12:03, 20 March 2008
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| , resolution 2.600Å | |||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE
Overview
The synthetic dodecameric RNA fragment rUAAGGAGGUGAU resembles a region upstream of the initiation site in prokaryotic mRNAs whereas the pyrimidine-rich complementary strand is identical to the last 12 nucleotides of Escherichia coli 16 S rRNA. The complex thus serves as a model for the Shine-Dalgarno interaction which is required for proper initiation of translation. The crystal structure of rUAAGGAGGUGUA.rAUCACCUCCUUA has been determined at 2.6 A resolution and refined against 2957 1 sigma(F) structure amplitudes to an R-value of 0.195. The unit cell of the triclinic crystals contains two double-stranded RNA molecules. The conformation of the two duplexes is similar, with a root-mean-square deviation of 0.683 A between equivalent atoms, and resembles calf thymus A-DNA as determined by X-ray fiber diffraction methods. Both molecules from continuous helices that penetrate the entire crystal, but the dinucleotide step in between dodecameric duplexes has an unusual geometry with a negative twist angle. The long helices cross over each other in a characteristic manner by inserting the backbone of one molecule into the minor groove of another. These contacts are stabilized by several direct intermolecular hydrogen bonds most of which are mediated by 2'-hydroxyl groups of the ribose sugars suggesting a general mode for the interaction between RNA molecules which is different from DNA-DNA interactions.
About this Structure
1SDR is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence., Schindelin H, Zhang M, Bald R, Furste JP, Erdmann VA, Heinemann U, J Mol Biol. 1995 Jun 9;249(3):595-603. PMID:7540215
Page seeded by OCA on Thu Mar 20 14:03:38 2008
