1trh
From Proteopedia
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| - | [[Image:1trh.gif|left|200px]] | + | [[Image:1trh.gif|left|200px]] |
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| - | '''TWO CONFORMATIONAL STATES OF CANDIDA RUGOSA LIPASE''' | + | {{Structure |
| + | |PDB= 1trh |SIZE=350|CAPTION= <scene name='initialview01'>1trh</scene>, resolution 2.1Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''TWO CONFORMATIONAL STATES OF CANDIDA RUGOSA LIPASE''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1TRH is a [ | + | 1TRH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Candida_rugosa Candida rugosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TRH OCA]. |
==Reference== | ==Reference== | ||
| - | Two conformational states of Candida rugosa lipase., Grochulski P, Li Y, Schrag JD, Cygler M, Protein Sci. 1994 Jan;3(1):82-91. PMID:[http:// | + | Two conformational states of Candida rugosa lipase., Grochulski P, Li Y, Schrag JD, Cygler M, Protein Sci. 1994 Jan;3(1):82-91. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8142901 8142901] |
[[Category: Candida rugosa]] | [[Category: Candida rugosa]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: hydrolase(carboxylic esterase)]] | [[Category: hydrolase(carboxylic esterase)]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:22:11 2008'' |
Revision as of 12:22, 20 March 2008
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| , resolution 2.1Å | |||||||
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| Ligands: | |||||||
| Activity: | Triacylglycerol lipase, with EC number 3.1.1.3 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
TWO CONFORMATIONAL STATES OF CANDIDA RUGOSA LIPASE
Overview
The structure of Candida rugosa lipase in a new crystal form has been determined and refined at 2.1 A resolution. The lipase molecule was found in an inactive conformation, with the active site shielded from the solvent by a part of the polypeptide chain-the flap. Comparison of this structure with the previously determined "open" form of this lipase, in which the active site is accessible to the solvent and presumably the substrate, shows that the transition between these 2 states requires only movement of the flap. The backbone NH groups forming the putative oxyanion hole do not change position during this rearrangement, indicating that this feature is preformed in the inactive state. The 2 lipase conformations probably correspond to states at opposite ends of the pathway of interfacial activation. Quantitative analysis indicates a large increase of the hydrophobic surface in the vicinity of the active site. The flap undergoes a flexible rearrangement during which some of its secondary structure refolds. The interactions of the flap with the rest of the protein change from mostly hydrophobic in the inactive form to largely hydrophilic in the "open" conformation. Although the flap movement cannot be described as a rigid body motion, it has very definite hinge points at Glu 66 and at Pro 92. The rearrangement is accompanied by a cis-trans isomerization of this proline, which likely increases the energy required for the transition between the 2 states, and may play a role in the stabilization of the active conformation at the water/lipid interface. Carbohydrate attached at Asn 351 also provides stabilization for the open conformation of the flap.
About this Structure
1TRH is a Single protein structure of sequence from Candida rugosa. Full crystallographic information is available from OCA.
Reference
Two conformational states of Candida rugosa lipase., Grochulski P, Li Y, Schrag JD, Cygler M, Protein Sci. 1994 Jan;3(1):82-91. PMID:8142901
Page seeded by OCA on Thu Mar 20 14:22:11 2008
