1u81

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[[Image:1u81.jpg|left|200px]]<br /><applet load="1u81" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:1u81.jpg|left|200px]]
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caption="1u81" />
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'''Delta-17 Human ADP Ribosylation Factor 1 Complexed with GDP'''<br />
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{{Structure
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|PDB= 1u81 |SIZE=350|CAPTION= <scene name='initialview01'>1u81</scene>
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|SITE=
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|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> and <scene name='pdbligand=GDP:GUANOSINE-5'-DIPHOSPHATE'>GDP</scene>
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|ACTIVITY=
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|GENE= Arf1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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}}
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'''Delta-17 Human ADP Ribosylation Factor 1 Complexed with GDP'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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1U81 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=GDP:'>GDP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U81 OCA].
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1U81 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U81 OCA].
==Reference==
==Reference==
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Conformational changes in human Arf1 on nucleotide exchange and deletion of membrane-binding elements., Seidel RD 3rd, Amor JC, Kahn RA, Prestegard JH, J Biol Chem. 2004 Nov 12;279(46):48307-18. Epub 2004 Aug 12. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15308674 15308674]
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Conformational changes in human Arf1 on nucleotide exchange and deletion of membrane-binding elements., Seidel RD 3rd, Amor JC, Kahn RA, Prestegard JH, J Biol Chem. 2004 Nov 12;279(46):48307-18. Epub 2004 Aug 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15308674 15308674]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: rdc refinement]]
[[Category: rdc refinement]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:21:32 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:28:28 2008''

Revision as of 12:28, 20 March 2008

Image:1u81.jpg


PDB ID 1u81

Drag the structure with the mouse to rotate
Ligands: and
Gene: Arf1 (Homo sapiens)
Coordinates: save as pdb, mmCIF, xml



Delta-17 Human ADP Ribosylation Factor 1 Complexed with GDP


Overview

Conformational changes associated with nucleotide exchange or truncation of the N-terminal alpha-helix of human Arf1 have been investigated by using forms of easily acquired NMR data, including residual dipolar couplings and amide proton exchange rates. ADP-ribosylation factors (Arfs) are 21-kDa GTPases that regulate aspects of membrane traffic in all eukaryotic cells. An essential component of the biological actions of Arfs is their ability to reversibly bind to membranes, a process that involves exposure of the myristoylated N-terminal amphipathic alpha-helix upon activation and GTP binding. Deletion of this helix results in a protein, termed Delta17Arf1, that has a reduced affinity for GDP and the ability to bind GTP in the absence of lipids or detergents. Previous studies, comparing crystal structures for Arf1.GDP and Delta17Arf1.GTP, identified several regions of structural variation and suggested that these be associated with nucleotide exchange rather than removal of the N-terminal helix. However, separation of conformational changes because of nucleotide binding and N-terminal truncation cannot be addressed in comparing these structures, because both the bound nucleotide and the N terminus differ. Resolving the two effects is important as any structural changes involving the N terminus may represent membrane-mediated conformational adjustments that precede GTP binding. Results from NMR experiments presented here on Arf1.GDP and Delta17Arf1.GDP in solution reveal substantial structural differences that can only be associated with N-terminal truncation.

About this Structure

1U81 is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Conformational changes in human Arf1 on nucleotide exchange and deletion of membrane-binding elements., Seidel RD 3rd, Amor JC, Kahn RA, Prestegard JH, J Biol Chem. 2004 Nov 12;279(46):48307-18. Epub 2004 Aug 12. PMID:15308674

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