1ux8
From Proteopedia
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| - | [[Image:1ux8.jpg|left|200px]] | + | [[Image:1ux8.jpg|left|200px]] |
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| - | '''X-RAY STRUCTURE OF TRUNCATED OXYGEN-AVID HAEMOGLOBIN FROM BACILLUS SUBTILIS''' | + | {{Structure |
| + | |PDB= 1ux8 |SIZE=350|CAPTION= <scene name='initialview01'>1ux8</scene>, resolution 2.15Å | ||
| + | |SITE= <scene name='pdbsite=AC1:Cyn+Binding+Site+For+Chain+A'>AC1</scene> | ||
| + | |LIGAND= <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene> and <scene name='pdbligand=HEM:PROTOPORPHYRIN IX CONTAINING FE'>HEM</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''X-RAY STRUCTURE OF TRUNCATED OXYGEN-AVID HAEMOGLOBIN FROM BACILLUS SUBTILIS''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1UX8 is a [ | + | 1UX8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UX8 OCA]. |
==Reference== | ==Reference== | ||
| - | The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties., Giangiacomo L, Ilari A, Boffi A, Morea V, Chiancone E, J Biol Chem. 2005 Mar 11;280(10):9192-202. Epub 2004 Dec 7. PMID:[http:// | + | The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties., Giangiacomo L, Ilari A, Boffi A, Morea V, Chiancone E, J Biol Chem. 2005 Mar 11;280(10):9192-202. Epub 2004 Dec 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15590662 15590662] |
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: truncated hemoglobin]] | [[Category: truncated hemoglobin]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:38:03 2008'' |
Revision as of 12:38, 20 March 2008
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| , resolution 2.15Å | |||||||
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| Ligands: | , and | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
X-RAY STRUCTURE OF TRUNCATED OXYGEN-AVID HAEMOGLOBIN FROM BACILLUS SUBTILIS
Overview
The group II truncated hemoglobin from Bacillus subtilis has been cloned, expressed, purified, and characterized. B. subtilis truncated hemoglobin is a monomeric protein endowed with an unusually high oxygen affinity (in the nanomolar range) such that the apparent thermodynamic binding constant for O2 exceeds that for CO by 1 order of magnitude. The kinetic basis of the high oxygen affinity resides mainly in the very slow rate of ligand release. The extremely stable ferrous oxygenated adduct is resistant to oxidation, which can be achieved only with oxidant in large excess, e.g. ferricyanide in 50-fold molar excess. The three-dimensional crystal structure of the cyano-Met derivative was determined at 2.15 A resolution. Although the overall fold resembles that of other truncated hemoglobins, the distal heme pocket displays a unique array of hydrophilic side chains in the topological positions that dominate the steric interaction with iron-bound ligands. In fact, the Tyr-B10, Thr-E7, and Gln-E11 oxygens on one side of the heme pocket and the Trp-G8 indole NE1 nitrogen on the other form a novel pattern of the "ligand-inclusive hydrogen bond network" described for mycobacterial HbO. On the proximal side, the histidine residue is in an unstrained conformation, and the iron-His bond is unusually short (1.91 A).
About this Structure
1UX8 is a Single protein structure of sequence from Bacillus subtilis. Full crystallographic information is available from OCA.
Reference
The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties., Giangiacomo L, Ilari A, Boffi A, Morea V, Chiancone E, J Biol Chem. 2005 Mar 11;280(10):9192-202. Epub 2004 Dec 7. PMID:15590662
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