This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oyo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2oyo" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:2oyo.png|left|200px]]
+
==Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution==
-
 
+
<StructureSection load='2oyo' size='340' side='right' caption='[[2oyo]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
-
{{STRUCTURE_2oyo| PDB=2oyo | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYO FirstGlance]. <br>
-
===Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])</td></tr>
-
==About this Structure==
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [http://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [http://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>
-
[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA].
+
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Deinococcus geothermalis]]
[[Category: Deinococcus geothermalis]]
[[Category: JCSG, Joint Center for Structural Genomics.]]
[[Category: JCSG, Joint Center for Structural Genomics.]]

Revision as of 18:30, 30 September 2014

Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution

2oyo, resolution 1.51Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2oyo"
Views
Personal tools
Navigation
Toolbox