This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oz3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2oz3" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:2oz3.png|left|200px]]
+
==Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii==
-
 
+
<StructureSection load='2oz3' size='340' side='right' caption='[[2oz3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
{{STRUCTURE_2oz3| PDB=2oz3 | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2oz3]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii_dj Azotobacter vinelandii dj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OZ3 FirstGlance]. <br>
-
===Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AVIN02004392, AvinDRAFT_6446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=322710 Azotobacter vinelandii DJ])</td></tr>
-
==About this Structure==
+
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-rhamnonate_dehydratase L-rhamnonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.90 4.2.1.90] </span></td></tr>
-
[[2oz3]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii_dj Azotobacter vinelandii dj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OZ3 OCA].
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oz3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oz3 RCSB], [http://www.ebi.ac.uk/pdbsum/2oz3 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2oz3 TOPSAN]</span></td></tr>
 +
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oz/2oz3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Azotobacter vinelandii dj]]
[[Category: Azotobacter vinelandii dj]]
[[Category: L-rhamnonate dehydratase]]
[[Category: L-rhamnonate dehydratase]]

Revision as of 19:43, 30 September 2014

Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii

2oz3, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Views
Personal tools
Navigation
Toolbox