This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cwi
From Proteopedia
(Difference between revisions)
m (Protected "3cwi" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of thiamine biosynthesis protein (ThiS) from Geobacter metallireducens. Northeast Structural Genomics Consortium Target GmR137== | |
| - | + | <StructureSection load='3cwi' size='340' side='right' caption='[[3cwi]], [[Resolution|resolution]] 1.90Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3cwi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CWI FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ThiS, Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 Geobacter metallireducens GS-15])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cwi RCSB], [http://www.ebi.ac.uk/pdbsum/3cwi PDBsum], [http://www.topsan.org/Proteins/NESGC/3cwi TOPSAN]</span></td></tr> | |
| - | == | + | </table> |
| - | [[3cwi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWI OCA]. | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/3cwi_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Geobacter metallireducens gs-15]] | [[Category: Geobacter metallireducens gs-15]] | ||
| - | [[Category: Abashidze, M | + | [[Category: Abashidze, M]] |
| - | [[Category: Acton, T B | + | [[Category: Acton, T B]] |
| - | [[Category: Ciccosanti, C | + | [[Category: Ciccosanti, C]] |
| - | [[Category: Everett, J K | + | [[Category: Everett, J K]] |
| - | [[Category: Foote, E L | + | [[Category: Foote, E L]] |
| - | [[Category: Forouhar, F | + | [[Category: Forouhar, F]] |
| - | [[Category: Hunt, J F | + | [[Category: Hunt, J F]] |
| - | [[Category: Janjua, H | + | [[Category: Janjua, H]] |
| - | [[Category: Maglaqui, M | + | [[Category: Maglaqui, M]] |
| - | [[Category: Mao, L | + | [[Category: Mao, L]] |
| - | [[Category: Montelione, G T | + | [[Category: Montelione, G T]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Seetharaman, J | + | [[Category: Seetharaman, J]] |
| - | [[Category: Tong, L | + | [[Category: Tong, L]] |
| - | [[Category: Wang, H | + | [[Category: Wang, H]] |
| - | [[Category: Xiao, R | + | [[Category: Xiao, R]] |
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Biosynthetic protein]] | [[Category: Biosynthetic protein]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 08:08, 20 January 2015
Crystal structure of thiamine biosynthesis protein (ThiS) from Geobacter metallireducens. Northeast Structural Genomics Consortium Target GmR137
| |||||||||||
Categories: Geobacter metallireducens gs-15 | Abashidze, M | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Forouhar, F | Hunt, J F | Janjua, H | Maglaqui, M | Mao, L | Montelione, G T | Structural genomic | Seetharaman, J | Tong, L | Wang, H | Xiao, R | Alpha-beta protein | Biosynthetic protein | Nesg | PSI, Protein structure initiative

