This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2nyx
From Proteopedia
m (Protected "2nyx" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of RV1404 from Mycobacterium tuberculosis== | |
| - | + | <StructureSection load='2nyx' size='340' side='right' caption='[[2nyx]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2nyx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_h37rv Mycobacterium tuberculosis h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYX FirstGlance]. <br> | |
| - | + | </td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rv1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 Mycobacterium tuberculosis H37Rv])</td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nyx RCSB], [http://www.ebi.ac.uk/pdbsum/2nyx PDBsum], [http://www.topsan.org/Proteins/ISFI/2nyx TOPSAN]</span></td></tr> | |
| - | == | + | <table> |
| - | [[2nyx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_h37rv Mycobacterium tuberculosis h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYX OCA]. | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyx_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Mycobacterium tuberculosis h37rv]] | [[Category: Mycobacterium tuberculosis h37rv]] | ||
[[Category: Bursey, E H.]] | [[Category: Bursey, E H.]] | ||
Revision as of 18:13, 30 September 2014
Crystal structure of RV1404 from Mycobacterium tuberculosis
| |||||||||||
Categories: Mycobacterium tuberculosis h37rv | Bursey, E H. | Hung, L W. | ISFI, Integrated Center for Structure and Function Innovation. | Kaviratne, T. | Kim, C Y. | Lekin, T. | Radhakannan, R. | Segelke, B W. | TBSGC, TB Structural Genomics Consortium. | Terwilliger, T C. | Toppani, D. | Woodruff, T. | Yu, M. | Alpha/beta | Integrated center for structure and function innovation | Isfi | Protein structure initiative | Psi-2 | Structural genomic | Tb structural genomics consortium | Tbsgc | Transcription

