This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




3ca8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ca8" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3ca8.png|left|200px]]
+
==Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme==
-
 
+
<StructureSection load='3ca8' size='340' side='right' caption='[[3ca8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
{{STRUCTURE_3ca8| PDB=3ca8 | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ca8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CA8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CA8 FirstGlance]. <br>
-
===Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ydcF, b1414, JW1411 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-
 
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ca8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ca8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ca8 RCSB], [http://www.ebi.ac.uk/pdbsum/3ca8 PDBsum]</span></td></tr>
-
==About this Structure==
+
<table>
-
[[3ca8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CA8 OCA].
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==Reference==
+
Check<jmol>
-
<ref group="xtra">PMID:018393394</ref><references group="xtra"/>
+
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ca/3ca8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Chao, K.]]
[[Category: Chao, K.]]

Revision as of 20:48, 2 October 2014

Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme

3ca8, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ca8"
Views
Personal tools
Navigation
Toolbox