This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bee

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3bee" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3bee.png|left|200px]]
+
==Crystal structure of putative YfrE protein from Vibrio parahaemolyticus==
-
 
+
<StructureSection load='3bee' size='340' side='right' caption='[[3bee]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
{{STRUCTURE_3bee| PDB=3bee | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3bee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEE FirstGlance]. <br>
-
===Crystal structure of putative YfrE protein from Vibrio parahaemolyticus===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP1931 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])</td></tr>
-
==About this Structure==
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bee OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bee RCSB], [http://www.ebi.ac.uk/pdbsum/3bee PDBsum], [http://www.topsan.org/Proteins/MCSG/3bee TOPSAN]</span></td></tr>
-
[[3bee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA].
+
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bee_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]
[[Category: Abdullah, J.]]
[[Category: Abdullah, J.]]

Revision as of 21:01, 2 October 2014

Crystal structure of putative YfrE protein from Vibrio parahaemolyticus

3bee, resolution 2.15Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bee"
Views
Personal tools
Navigation
Toolbox