2x7r

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[[Image:2x7r.png|left|200px]]
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==CRYSTAL STRUCTURE OF A LATE FUSION INTERMEDIATE OF HIV-1 GP41==
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<StructureSection load='2x7r' size='340' side='right' caption='[[2x7r]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2x7r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_lw12.3_isolate Human immunodeficiency virus type 1 lw12.3 isolate]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X7R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2X7R FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1df4|1df4]], [[1opn|1opn]], [[1df5|1df5]], [[1dlb|1dlb]], [[1opw|1opw]], [[1gc1|1gc1]], [[1opt|1opt]], [[1k33|1k33]], [[1rzj|1rzj]], [[1g9m|1g9m]], [[1k34|1k34]], [[2cmr|2cmr]], [[1aik|1aik]], [[1gzl|1gzl]], [[1mzi|1mzi]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x7r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2x7r RCSB], [http://www.ebi.ac.uk/pdbsum/2x7r PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x7/2x7r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The HIV-1 envelope glycoprotein (Env) composed of the receptor binding domain gp120 and the fusion protein subunit gp41 catalyzes virus entry and is a major target for therapeutic intervention and for neutralizing antibodies. Env interactions with cellular receptors trigger refolding of gp41, which induces close apposition of viral and cellular membranes leading to membrane fusion. The energy released during refolding is used to overcome the kinetic barrier and drives the fusion reaction. Here, we report the crystal structure at 2 A resolution of the complete extracellular domain of gp41 lacking the fusion peptide and the cystein-linked loop. Both the fusion peptide proximal region (FPPR) and the membrane proximal external region (MPER) form helical extensions from the gp41 six-helical bundle core structure. The lack of regular coiled-coil interactions within FPPR and MPER splay this end of the structure apart while positioning the fusion peptide towards the outside of the six-helical bundle and exposing conserved hydrophobic MPER residues. Unexpectedly, the section of the MPER, which is juxtaposed to the transmembrane region (TMR), bends in a 90 degrees-angle sideward positioning three aromatic side chains per monomer for membrane insertion. We calculate that this structural motif might facilitate the generation of membrane curvature on the viral membrane. The presence of FPPR and MPER increases the melting temperature of gp41 significantly in comparison to the core structure of gp41. Thus, our data indicate that the ordered assembly of FPPR and MPER beyond the core contributes energy to the membrane fusion reaction. Furthermore, we provide the first structural evidence that part of MPER will be membrane inserted within trimeric gp41. We propose that this framework has important implications for membrane bending on the viral membrane, which is required for fusion and could provide a platform for epitope and lipid bilayer recognition for broadly neutralizing gp41 antibodies.
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{{STRUCTURE_2x7r| PDB=2x7r | SCENE= }}
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Crystal structure of HIV-1 gp41 including both fusion peptide and membrane proximal external regions.,Buzon V, Natrajan G, Schibli D, Campelo F, Kozlov MM, Weissenhorn W PLoS Pathog. 2010 May 6;6(5):e1000880. PMID:20463810<ref>PMID:20463810</ref>
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===CRYSTAL STRUCTURE OF A LATE FUSION INTERMEDIATE OF HIV-1 GP41===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_20463810}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[2x7r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_lw12.3_isolate Human immunodeficiency virus type 1 lw12.3 isolate]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X7R OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:020463810</ref><references group="xtra"/>
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[[Category: Human immunodeficiency virus type 1 lw12 3 isolate]]
[[Category: Human immunodeficiency virus type 1 lw12 3 isolate]]
[[Category: Buzon, V.]]
[[Category: Buzon, V.]]

Revision as of 13:25, 22 October 2014

CRYSTAL STRUCTURE OF A LATE FUSION INTERMEDIATE OF HIV-1 GP41

2x7r, resolution 2.00Å

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