4be2
From Proteopedia
(Difference between revisions)
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- | [[ | + | ==PFV intasome with inhibitor XZ-259== |
+ | <StructureSection load='4be2' size='340' side='right' caption='[[4be2]], [[Resolution|resolution]] 2.38Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4be2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BE2 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=XZ2:2-(3-CHLORO-4-FLUOROBENZYL)-6,7-DIHYDROXY-N,N-DIMETHYL-1-OXO-2,3-DIHYDRO-1H-ISOINDOLE-4-SULFONAMIDE'>XZ2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x6n|2x6n]], [[2x6s|2x6s]], [[2x74|2x74]], [[2x78|2x78]], [[4bac|4bac]], [[4bdy|4bdy]], [[4bdz|4bdz]], [[4be0|4be0]], [[4be1|4be1]]</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4be2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4be2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4be2 RCSB], [http://www.ebi.ac.uk/pdbsum/4be2 PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Based on a series of lactam and phthalimide derivatives that inhibit HIV-1 integrase, we developed a new derivative, XZ-259, with biochemical and antiviral activities comparable to raltegravir. We determined the crystal structures of XZ-259 and four other derivatives in complex with the prototype foamy virus intasome. The compounds bind at the integrase-Mg2+-DNA interface of the integrase active site. In biochemical and antiviral assays, XZ-259 inhibits raltegravir-resistant HIV-1 integrases harboring the Y143R mutation. Molecular modeling is also presented suggesting that XZ-259 can bind in the HIV-1 intasome with its dimethyl sulfonamide group adopting two opposite orientations. Molecular dynamics analyses of the HIV-1 intasome highlight the importance of the viral DNA in drug potency. | ||
- | + | Activities, crystal structures and molecular dynamics of dihydro-1H-isoindole derivatives, inhibitors of HIV-1 integrase.,Metifiot M, Maddali K, Johnson BC, Hare S, Smith SJ, Zhao XZ, Marchand C, Burke TR, Hughes SH, Cherepanov P, Pommier Y ACS Chem Biol. 2012 Oct 17. PMID:23075516<ref>PMID:23075516</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | == References == | |
- | + | <references/> | |
- | == | + | __TOC__ |
- | + | </StructureSection> | |
[[Category: Human spumaretrovirus]] | [[Category: Human spumaretrovirus]] | ||
- | [[Category: Cherepanov, P | + | [[Category: Cherepanov, P]] |
- | [[Category: Hare, S | + | [[Category: Hare, S]] |
[[Category: Dna integration]] | [[Category: Dna integration]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] |
Revision as of 15:48, 9 December 2014
PFV intasome with inhibitor XZ-259
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Categories: Human spumaretrovirus | Cherepanov, P | Hare, S | Dna integration | Dna-binding | Endonuclease | Hhcc motif | Inhibitor | Metal-binding | Multifunctional enzyme | Nuclease | Nucleotidyltransferase | Nucleus | Recombination | Recombination-inhibitor-dna complex | Transferase | Transferase-dna complex | Viral nucleoprotein | Viral protein | Virion | Zinc binding