2vak

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[[Image:2vak.png|left|200px]]
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==CRYSTAL STRUCTURE OF THE AVIAN REOVIRUS INNER CAPSID PROTEIN SIGMAA==
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<StructureSection load='2vak' size='340' side='right' caption='[[2vak]], [[Resolution|resolution]] 2.34&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2vak]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Avian_orthoreovirus Avian orthoreovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VAK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VAK FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vak FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vak OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vak RCSB], [http://www.ebi.ac.uk/pdbsum/2vak PDBsum]</span></td></tr>
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<table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/2vak_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Avian reovirus, an important avian pathogen, expresses eight structural and four nonstructural proteins. The structural sigmaA protein is a major component of the inner capsid, clamping together lambdaA building blocks. sigmaA has also been implicated in the resistance of avian reovirus to the antiviral action of interferon by strongly binding double-stranded RNA in the host cell cytoplasm and thus inhibiting activation of the double-stranded RNA-dependent protein kinase. We have solved the structure of bacterially expressed sigmaA by molecular replacement and refined it using data to 2.3-A resolution. Twelve sigmaA molecules are present in the P1 unit cell, arranged as two short double helical hexamers. A positively charged patch is apparent on the surface of sigmaA on the inside of this helix and mutation of either of two key arginine residues (Arg155 and Arg273) within this patch abolishes double-stranded RNA binding. The structural data, together with gel shift assay, electron microscopy, and sedimentation velocity centrifugation results, provide evidence for cooperative binding of sigmaA to double-stranded RNA. The minimal length of double-stranded RNA required for sigmaA binding was observed to be 14 to 18 bp.
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{{STRUCTURE_2vak| PDB=2vak | SCENE= }}
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Crystal structure of the avian reovirus inner capsid protein sigmaA.,Guardado-Calvo P, Vazquez-Iglesias L, Martinez-Costas J, Llamas-Saiz AL, Schoehn G, Fox GC, Hermo-Parrado XL, Benavente J, van Raaij MJ J Virol. 2008 Nov;82(22):11208-16. Epub 2008 Sep 17. PMID:18799570<ref>PMID:18799570</ref>
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===CRYSTAL STRUCTURE OF THE AVIAN REOVIRUS INNER CAPSID PROTEIN SIGMAA===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_18799570}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[2vak]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Avian_orthoreovirus Avian orthoreovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VAK OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:018799570</ref><ref group="xtra">PMID:017565188</ref><references group="xtra"/>
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[[Category: Avian orthoreovirus]]
[[Category: Avian orthoreovirus]]
[[Category: Benavente, J.]]
[[Category: Benavente, J.]]

Revision as of 01:19, 1 October 2014

CRYSTAL STRUCTURE OF THE AVIAN REOVIRUS INNER CAPSID PROTEIN SIGMAA

2vak, resolution 2.34Å

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