This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3e11
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of a predicted zincin-like metalloprotease (acel_2062) from acidothermus cellulolyticus 11b at 1.80 A resolution== | |
| - | + | <StructureSection load='3e11' size='340' side='right' caption='[[3e11]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3e11]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acidothermus_cellulolyticus_11b Acidothermus cellulolyticus 11b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E11 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E11 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_873820.1, Acel_2062 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=351607 Acidothermus cellulolyticus 11B])</td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e11 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e11 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e11 RCSB], [http://www.ebi.ac.uk/pdbsum/3e11 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e11 TOPSAN]</span></td></tr> |
| - | [[3e11]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acidothermus_cellulolyticus_11b Acidothermus cellulolyticus 11b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E11 OCA]. | + | </table> |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e1/3e11_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Acidothermus cellulolyticus 11b]] | [[Category: Acidothermus cellulolyticus 11b]] | ||
| - | [[Category: | + | [[Category: Structural genomic]] |
[[Category: Conserved matrix metalloprotease motif]] | [[Category: Conserved matrix metalloprotease motif]] | ||
[[Category: Duf1025 family protein]] | [[Category: Duf1025 family protein]] | ||
[[Category: Jcsg]] | [[Category: Jcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
[[Category: Zincin-like fold]] | [[Category: Zincin-like fold]] | ||
Revision as of 13:23, 19 November 2014
Crystal structure of a predicted zincin-like metalloprotease (acel_2062) from acidothermus cellulolyticus 11b at 1.80 A resolution
| |||||||||||

