This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fij

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3fij" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3fij.png|left|200px]]
+
==Crystal structure of a uncharacterized protein lin1909==
-
 
+
<StructureSection load='3fij' size='340' side='right' caption='[[3fij]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
{{STRUCTURE_3fij| PDB=3fij | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3fij]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FIJ FirstGlance]. <br>
-
===Crystal structure of a uncharacterized protein lin1909===
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
 
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lin1909 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1642 Listeria innocua])</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fij OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fij RCSB], [http://www.ebi.ac.uk/pdbsum/3fij PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fij TOPSAN]</span></td></tr>
-
[[3fij]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIJ OCA].
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fij_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Listeria innocua]]
[[Category: Listeria innocua]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley, S K]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
-
[[Category: Sugadev, R.]]
+
-
[[Category: Swaminathan, S.]]
+
-
[[Category: 11172j]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Sugadev, R]]
 +
[[Category: Swaminathan, S]]
 +
[[Category: Nysgrc]]
 +
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Uncharacterized protein]]
[[Category: Uncharacterized protein]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Revision as of 12:51, 6 November 2014

Crystal structure of a uncharacterized protein lin1909

3fij, resolution 2.30Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools