282d
From Proteopedia
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| - | [[Image:282d.gif|left|200px]] | + | [[Image:282d.gif|left|200px]] |
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| - | '''A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG''' | + | {{Structure |
| + | |PDB= 282d |SIZE=350|CAPTION= <scene name='initialview01'>282d</scene>, resolution 2.400Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=NGM:NOGALAMYCIN'>NGM</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 282D is a [ | + | 282D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=282D OCA]. |
==Reference== | ==Reference== | ||
| - | A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG., Cruse WB, Saludjian P, Leroux Y, Leger G, Manouni DE, Prange T, J Biol Chem. 1996 Jun 28;271(26):15558-67. PMID:[http:// | + | A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG., Cruse WB, Saludjian P, Leroux Y, Leger G, Manouni DE, Prange T, J Biol Chem. 1996 Jun 28;271(26):15558-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8662899 8662899] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Cruse, W.]] | [[Category: Cruse, W.]] | ||
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[[Category: right handed dna]] | [[Category: right handed dna]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:43:35 2008'' |
Revision as of 13:43, 20 March 2008
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| , resolution 2.400Å | |||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG
Overview
The antibiotic nogalamycin, a drug with high specificity for TG and CG steps in double-stranded DNA, has been crystallized as a 1:1 complex with the hexamer d(CCCGGG). The antibiotic is inserted at the central CG step of the duplex, with the two sugars oriented in the same direction and with strong interactions with the DNA within the grooves. The amino-glucose residue makes an integral part of a well defined major groove hydration network with van der Waals contacts and several strong hydrogen bonds to the duplex. The nogalose residue resides in the minor groove, making primarily van der Waals contacts. The single site allows an accurate molecular description of the intercalation, without perturbations from end effects observed previously. The local unwinding induced by nogalamycin is completely relaxed 2 base pairs away from the intercalation site. The two strands of the DNA show a continuous deformation from the A to the B form: 1) the cytosines toward the 5' end of the nogalomycin site in each strand have c3'-endo conformations while 5 guanosines toward the 3' ends have c2'-endo conformations; 2) within each strand, the phosphate-phosphate distances increase in a continuous manner from 5.7 A (A-form) to 7.1 A (B-form).
About this Structure
282D is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG., Cruse WB, Saludjian P, Leroux Y, Leger G, Manouni DE, Prange T, J Biol Chem. 1996 Jun 28;271(26):15558-67. PMID:8662899
Page seeded by OCA on Thu Mar 20 15:43:35 2008
