This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3hd5
From Proteopedia
(Difference between revisions)
m (Protected "3hd5" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of a thiol:disulfide interchange protein dsbA from Bordetella parapertussis== | |
| - | + | <StructureSection load='3hd5' size='340' side='right' caption='[[3hd5]], [[Resolution|resolution]] 2.35Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3hd5]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis Bordetella parapertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HD5 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BPP4354, dsbA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=519 Bordetella parapertussis])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hd5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3hd5 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3hd5 TOPSAN]</span></td></tr> | |
| - | == | + | </table> |
| - | [[3hd5]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis Bordetella parapertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD5 OCA]. | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hd/3hd5_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Bordetella parapertussis]] | [[Category: Bordetella parapertussis]] | ||
| - | [[Category: Burley, S K | + | [[Category: Burley, S K]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Palani, K | + | [[Category: Palani, K]] |
| - | [[Category: Swaminathan, S | + | [[Category: Swaminathan, S]] |
| - | + | ||
[[Category: Disulfide bond]] | [[Category: Disulfide bond]] | ||
[[Category: Dsba]] | [[Category: Dsba]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Redox-active center]] | [[Category: Redox-active center]] | ||
| - | [[Category: Structural genomic]] | ||
Revision as of 13:56, 6 November 2014
Crystal structure of a thiol:disulfide interchange protein dsbA from Bordetella parapertussis
| |||||||||||
