4gms

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4gms| PDB=4gms | SCENE= }}
+
==Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin==
-
===Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin===
+
<StructureSection load='4gms' size='340' side='right' caption='[[4gms]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_23027945}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4gms]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/victoria/3/1975(h3n2)) Influenza a virus (a/victoria/3/1975(h3n2))] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GMS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GMS FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
 +
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4gmt|4gmt]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392809 Influenza A virus (A/Victoria/3/1975(H3N2))])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gms FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gms OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gms RCSB], [http://www.ebi.ac.uk/pdbsum/4gms PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Continual and rapid mutation of seasonal influenza viruses by antigenic drift necessitates the almost annual reformulation of flu vaccines, which may offer little protection if the match to the dominant circulating strain is poor. S139/1 is a cross-reactive antibody that neutralizes multiple HA strains and subtypes, including those from H1N1 and H3N2 viruses that currently infect humans. The crystal structure of the S139/1 Fab in complex with the HA from the A/Victoria/3/1975 (H3N2) virus reveals that the antibody targets highly conserved residues in the receptor binding site and contacts antigenic sites A, B, and D. Binding and plaque reduction assays show that the monovalent Fab alone can protect against H3 strains, but the enhanced avidity from binding of bivalent IgG increases the breadth of neutralization to additional strains from the H1, H2, H13, and H16 subtypes. Thus, antibodies making relatively low affinity Fab interactions with the receptor binding site can have significant antiviral activity when enhanced by avidity through bivalent interactions of the IgG, thereby extending the breadth of binding and neutralization to highly divergent influenza virus strains and subtypes.
-
==About this Structure==
+
Heterosubtypic antibody recognition of the influenza virus hemagglutinin receptor binding site enhanced by avidity.,Lee PS, Yoshida R, Ekiert DC, Sakai N, Suzuki Y, Takada A, Wilson IA Proc Natl Acad Sci U S A. 2012 Oct 1. PMID:23027945<ref>PMID:23027945</ref>
-
[[4gms]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/victoria/3/1975(h3n2)) Influenza a virus (a/victoria/3/1975(h3n2))] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GMS OCA].
+
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
==See Also==
==See Also==
*[[Hemagglutinin|Hemagglutinin]]
*[[Hemagglutinin|Hemagglutinin]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Ekiert, D C.]]
+
[[Category: Ekiert, D C]]
-
[[Category: Lee, P S.]]
+
[[Category: Lee, P S]]
-
[[Category: Wilson, I A.]]
+
[[Category: Wilson, I A]]
[[Category: Immune recognition]]
[[Category: Immune recognition]]
[[Category: Immunoglobulin]]
[[Category: Immunoglobulin]]
[[Category: Viral protein-immune system complex]]
[[Category: Viral protein-immune system complex]]
[[Category: Virus attachment and entry]]
[[Category: Virus attachment and entry]]

Revision as of 08:46, 18 December 2014

Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin

4gms, resolution 2.95Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools