3fku
From Proteopedia
(Difference between revisions)
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- | + | ==Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10== | |
- | + | <StructureSection load='3fku' size='340' side='right' caption='[[3fku]], [[Resolution|resolution]] 3.20Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[3fku]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Influenza_a_virus Influenza a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FKU FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ibx|2ibx]], [[2fk0|2fk0]], [[2ghw|2ghw]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11320 Influenza A virus])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fku RCSB], [http://www.ebi.ac.uk/pdbsum/3fku PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/3fku_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Influenza virus remains a serious health threat, owing to its ability to evade immune surveillance through rapid genetic drift and reassortment. Here we used a human non-immune antibody phage-display library and the H5 hemagglutinin ectodomain to select ten neutralizing antibodies (nAbs) that were effective against all group 1 influenza viruses tested, including H5N1 'bird flu' and the H1N1 'Spanish flu'. The crystal structure of one such nAb bound to H5 shows that it blocks infection by inserting its heavy chain into a conserved pocket in the stem region, thus preventing membrane fusion. Nine of the nAbs employ the germline gene VH1-69, and all seem to use the same neutralizing mechanism. Our data further suggest that this region is recalcitrant to neutralization escape and that nAb-based immunotherapy is a promising strategy for broad-spectrum protection against seasonal and pandemic influenza viruses. | ||
- | + | Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses.,Sui J, Hwang WC, Perez S, Wei G, Aird D, Chen LM, Santelli E, Stec B, Cadwell G, Ali M, Wan H, Murakami A, Yammanuru A, Han T, Cox NJ, Bankston LA, Donis RO, Liddington RC, Marasco WA Nat Struct Mol Biol. 2009 Mar;16(3):265-73. Epub 2009 Feb 22. PMID:19234466<ref>PMID:19234466</ref> | |
- | + | ||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
==See Also== | ==See Also== | ||
*[[Antibody|Antibody]] | *[[Antibody|Antibody]] | ||
*[[Hemagglutinin|Hemagglutinin]] | *[[Hemagglutinin|Hemagglutinin]] | ||
- | + | == References == | |
- | == | + | <references/> |
- | < | + | __TOC__ |
+ | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Influenza a virus]] | [[Category: Influenza a virus]] | ||
- | [[Category: Aird, D | + | [[Category: Aird, D]] |
- | [[Category: Ali, M | + | [[Category: Ali, M]] |
- | [[Category: Bankston, L A | + | [[Category: Bankston, L A]] |
- | [[Category: Cadwell, G | + | [[Category: Cadwell, G]] |
- | [[Category: Chen, L M | + | [[Category: Chen, L M]] |
- | [[Category: Cox, N | + | [[Category: Cox, N]] |
- | [[Category: Donis, R O | + | [[Category: Donis, R O]] |
- | [[Category: Han, T | + | [[Category: Han, T]] |
- | [[Category: Hwang, W C | + | [[Category: Hwang, W C]] |
- | [[Category: Liddington, R C | + | [[Category: Liddington, R C]] |
- | [[Category: Marasco, W A | + | [[Category: Marasco, W A]] |
- | [[Category: Murakami, A | + | [[Category: Murakami, A]] |
- | [[Category: Perez, S | + | [[Category: Perez, S]] |
- | [[Category: Santelli, E | + | [[Category: Santelli, E]] |
- | [[Category: Stec, B | + | [[Category: Stec, B]] |
- | [[Category: Sui, J | + | [[Category: Sui, J]] |
- | [[Category: Wei, G | + | [[Category: Wei, G]] |
- | [[Category: Yammanuru, A | + | [[Category: Yammanuru, A]] |
[[Category: Cell membrane]] | [[Category: Cell membrane]] | ||
[[Category: Cleavage on pair of basic residue]] | [[Category: Cleavage on pair of basic residue]] |
Revision as of 13:44, 17 December 2014
Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10
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Categories: Homo sapiens | Influenza a virus | Aird, D | Ali, M | Bankston, L A | Cadwell, G | Chen, L M | Cox, N | Donis, R O | Han, T | Hwang, W C | Liddington, R C | Marasco, W A | Murakami, A | Perez, S | Santelli, E | Stec, B | Sui, J | Wei, G | Yammanuru, A | Cell membrane | Cleavage on pair of basic residue | Envelope protein | F10 | Fusion protein | Glycoprotein | H5 | Hemagglutinin | Influenza | Lipoprotein | Membrane | Neutralizing antibody | Palmitate | Scfv | Transmembrane | Viral protein | Viral protein-immune system complex | Virion