4dkr

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{{STRUCTURE_4dkr| PDB=4dkr | SCENE= }}
 
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===Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AWS-I-169===
 
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{{ABSTRACT_PUBMED_22497421}}
 
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==About this Structure==
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==Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AWS-I-169==
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[[4dkr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKR OCA].
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<StructureSection load='4dkr' size='340' side='right' caption='[[4dkr]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4dkr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hiv-1 Hiv-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DKR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0LJ:N-[(1R,2R)-2-CARBAMIMIDAMIDO-2,3-DIHYDRO-1H-INDEN-1-YL]-N-(4-CHLORO-3-FLUOROPHENYL)ETHANEDIAMIDE'>0LJ</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dko|4dko]], [[4dkp|4dkp]], [[4dkq|4dkq]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HIV-1 Env ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11686 HIV-1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dkr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dkr OCA], [http://pdbe.org/4dkr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dkr RCSB], [http://www.ebi.ac.uk/pdbsum/4dkr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dkr ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cellular infection by HIV-1 is initiated with a binding event between the viral envelope glycoprotein gp120 and the cellular receptor protein CD4. The CD4-gp120 interface is dominated by two hotspots: a hydrophobic gp120 cavity capped by Phe43(CD4) and an electrostatic interaction between residues Arg59(CD4) and Asp368(gp120). The CD4 mimetic small-molecule NBD-556 (1) binds within the gp120 cavity; however, 1 and related congeners demonstrate limited viral neutralization breadth. Herein, we report the design, synthesis, characterization, and X-ray structures of gp120 in complex with small molecules that simultaneously engage both binding hotspots. The compounds specifically inhibit viral infection of 42 tier 2 clades B and C viruses and are shown to be antagonists of entry into CD4-negative cells. Dual hotspot design thus provides both a means to enhance neutralization potency of HIV-1 entry inhibitors and a novel structural paradigm for inhibiting the CD4-gp120 protein-protein interaction.
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Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors.,Lalonde JM, Kwon YD, Jones DM, Sun AW, Courter JR, Soeta T, Kobayashi T, Princiotto AM, Wu X, Schon A, Freire E, Kwong PD, Mascola JR, Sodroski J, Madani N, Smith AB 3rd J Med Chem. 2012 Apr 23. PMID:22497421<ref>PMID:22497421</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4dkr" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
*[[Gp120|Gp120]]
*[[Gp120|Gp120]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:022497421</ref><references group="xtra"/>
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__TOC__
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[[Category: Human immunodeficiency virus 1]]
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</StructureSection>
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[[Category: Courter, J R.]]
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[[Category: Hiv-1]]
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[[Category: Freire, E.]]
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[[Category: Courter, J R]]
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[[Category: III, A B.Smith.]]
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[[Category: Freire, E]]
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[[Category: Jones, D M.]]
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[[Category: III, A B.Smith]]
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[[Category: Kobayashi, T.]]
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[[Category: Jones, D M]]
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[[Category: Kwon, Y D.]]
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[[Category: Kobayashi, T]]
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[[Category: Kwong, P D.]]
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[[Category: Kwon, Y D]]
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[[Category: LaLonde, J M.]]
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[[Category: Kwong, P D]]
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[[Category: Madani, N.]]
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[[Category: LaLonde, J M]]
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[[Category: Mascola, J.]]
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[[Category: Madani, N]]
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[[Category: Princiotto, A M.]]
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[[Category: Mascola, J]]
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[[Category: Schon, A.]]
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[[Category: Princiotto, A M]]
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[[Category: Sodroski, J.]]
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[[Category: Schon, A]]
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[[Category: Soeta, T.]]
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[[Category: Sodroski, J]]
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[[Category: Sun, A W.]]
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[[Category: Soeta, T]]
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[[Category: Wu, X.]]
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[[Category: Sun, A W]]
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[[Category: Wu, X]]
[[Category: Aws-i-169]]
[[Category: Aws-i-169]]
[[Category: Cd4 mimic]]
[[Category: Cd4 mimic]]

Revision as of 18:35, 4 August 2016

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AWS-I-169

4dkr, resolution 1.80Å

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