This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2qde
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of mandelate racemase/muconate lactonizing family protein from Azoarcus sp. EbN1== | |
| - | + | <StructureSection load='2qde' size='340' side='right' caption='[[2qde]], [[Resolution|resolution]] 1.93Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[2qde]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Azoarcus_sp. Azoarcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QDE FirstGlance]. <br> |
| - | [[2qde]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Azoarcus_sp. Azoarcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDE OCA]. | + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BA:BARIUM+ION'>BA</scene><br> |
| + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AZOSEA32060, AZOSEA32140, ebA5637, ebA5652 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29544 Azoarcus sp.])</td></tr> | ||
| + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2qde RCSB], [http://www.ebi.ac.uk/pdbsum/2qde PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2qde TOPSAN]</span></td></tr> | ||
| + | <table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qd/2qde_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Mandelate racemase|Mandelate racemase]] | *[[Mandelate racemase|Mandelate racemase]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Azoarcus sp.]] | [[Category: Azoarcus sp.]] | ||
[[Category: Agarwal, R.]] | [[Category: Agarwal, R.]] | ||
Revision as of 19:28, 30 September 2014
Crystal structure of mandelate racemase/muconate lactonizing family protein from Azoarcus sp. EbN1
| |||||||||||
