3u3w
From Proteopedia
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- | {{STRUCTURE_3u3w| PDB=3u3w | SCENE= }} | ||
- | ===Crystal Structure of Bacillus thuringiensis PlcR in complex with the peptide PapR7 and DNA=== | ||
- | {{ABSTRACT_PUBMED_23277548}} | ||
- | == | + | ==Crystal Structure of Bacillus thuringiensis PlcR in complex with the peptide PapR7 and DNA== |
- | [[3u3w]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_thuringiensis_bt407 Bacillus thuringiensis bt407]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U3W OCA]. | + | <StructureSection load='3u3w' size='340' side='right' caption='[[3u3w]], [[Resolution|resolution]] 2.40Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3u3w]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_thuringiensis_bt407 Bacillus thuringiensis bt407]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U3W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U3W FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">plcR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=527021 Bacillus thuringiensis Bt407])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u3w OCA], [http://pdbe.org/3u3w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3u3w RCSB], [http://www.ebi.ac.uk/pdbsum/3u3w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3u3w ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The quorum-sensing regulator PlcR is the master regulator of most known virulence factors in Bacillus cereus. It is a helix-turn-helix (HTH)-type transcription factor activated upon binding of its cognate signaling peptide PapR on a tetratricopeptide repeat-type regulatory domain. The structural and functional properties of PlcR have defined a new family of sensor regulators, called the RNPP family (for Rap, NprR, PrgX, and PlcR), in Gram-positive bacteria. To fully understand the activation mechanism of PlcR, we took a closer look at the conformation changes induced upon binding of PapR and of its target DNA, known as PlcR-box. For that purpose we have determined the structures of the apoform of PlcR (Apo PlcR) and of the ternary complex of PlcR with PapR and the PlcR-box from the plcA promoter. Comparison of the apoform of PlcR with the previously published structure of the PlcR-PapR binary complex shows how a small conformational change induced in the C-terminal region of the tetratricopeptide repeat (TPR) domain upon peptide binding propagates via the linker helix to the N-terminal HTH DNA-binding domain. Further comparison with the PlcR-PapR-DNA ternary complex shows how the activation of the PlcR dimer allows the linker helix to undergo a drastic conformational change and subsequent proper positioning of the HTH domains in the major groove of the two half sites of the pseudopalindromic PlcR-box. Together with random mutagenesis experiments and interaction measurements using peptides from distinct pherogroups, this structural analysis allows us to propose a molecular mechanism for this functional switch. | ||
+ | |||
+ | Structural basis for the activation mechanism of the PlcR virulence regulator by the quorum-sensing signal peptide PapR.,Grenha R, Slamti L, Nicaise M, Refes Y, Lereclus D, Nessler S Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1047-52. doi:, 10.1073/pnas.1213770110. Epub 2012 Dec 31. PMID:23277548<ref>PMID:23277548</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 3u3w" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Transcriptional activator|Transcriptional activator]] | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Bacillus thuringiensis bt407]] | [[Category: Bacillus thuringiensis bt407]] | ||
- | [[Category: Bouillaut, L | + | [[Category: Bouillaut, L]] |
- | [[Category: Grenha, R | + | [[Category: Grenha, R]] |
- | [[Category: Lereclus, D | + | [[Category: Lereclus, D]] |
- | [[Category: Nessler, S | + | [[Category: Nessler, S]] |
- | [[Category: Slamti, L | + | [[Category: Slamti, L]] |
[[Category: Hth dna-binding domain]] | [[Category: Hth dna-binding domain]] | ||
[[Category: Plcr-papr7-dna]] | [[Category: Plcr-papr7-dna]] |
Revision as of 02:54, 5 August 2016
Crystal Structure of Bacillus thuringiensis PlcR in complex with the peptide PapR7 and DNA
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