This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3hxk
From Proteopedia
(Difference between revisions)
m (Protected "3hxk" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal Structure of a sugar hydrolase (YeeB) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR108== | |
| - | + | <StructureSection load='3hxk' size='340' side='right' caption='[[3hxk]], [[Resolution|resolution]] 3.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3hxk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HXK FirstGlance]. <br> |
| - | [[3hxk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HXK OCA]. | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">L427, L42784, LL0430, yeeB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 Lactococcus lactis subsp. lactis])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hxk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hxk RCSB], [http://www.ebi.ac.uk/pdbsum/3hxk PDBsum], [http://www.topsan.org/Proteins/NESGC/3hxk TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/3hxk_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Lactococcus lactis subsp. lactis]] | [[Category: Lactococcus lactis subsp. lactis]] | ||
| - | [[Category: Acton, T B | + | [[Category: Acton, T B]] |
| - | [[Category: Ciccosanti,C | + | [[Category: Ciccosanti,C]] |
| - | [[Category: Everett, J K | + | [[Category: Everett, J K]] |
| - | [[Category: Foote,E L | + | [[Category: Foote,E L]] |
| - | [[Category: Forouhar,F | + | [[Category: Forouhar,F]] |
| - | [[Category: Hunt,J F | + | [[Category: Hunt,J F]] |
| - | [[Category: Maglaqui,M | + | [[Category: Maglaqui,M]] |
| - | [[Category: Mao,M | + | [[Category: Mao,M]] |
| - | [[Category: Montelione, G T | + | [[Category: Montelione, G T]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Nair, R | + | [[Category: Nair, R]] |
| - | [[Category: Rost, B | + | [[Category: Rost, B]] |
| - | [[Category: Seetharaman, J | + | [[Category: Seetharaman, J]] |
| - | [[Category: Su, M | + | [[Category: Su, M]] |
| - | [[Category: Tong,L | + | [[Category: Tong,L]] |
| - | [[Category: Xiao,R | + | [[Category: Xiao,R]] |
| - | [[Category: Zhao,L | + | [[Category: Zhao,L]] |
| - | [[Category: Alpha-beta protein | + | [[Category: Alpha-beta protein]] |
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 05:57, 18 December 2014
Crystal Structure of a sugar hydrolase (YeeB) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR108
| |||||||||||
Categories: Lactococcus lactis subsp. lactis | Acton, T B | Ciccosanti,C | Everett, J K | Foote,E L | Forouhar,F | Hunt,J F | Maglaqui,M | Mao,M | Montelione, G T | Structural genomic | Nair, R | Rost, B | Seetharaman, J | Su, M | Tong,L | Xiao,R | Zhao,L | Alpha-beta protein | Hydrolase | Nesg | PSI, Protein structure initiative

