2btd

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[[Image:2btd.gif|left|200px]]<br /><applet load="2btd" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:2btd.gif|left|200px]]
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caption="2btd, resolution 2.60&Aring;" />
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'''CRYSTAL STRUCTURE OF DHAL FROM E. COLI'''<br />
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{{Structure
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|PDB= 2btd |SIZE=350|CAPTION= <scene name='initialview01'>2btd</scene>, resolution 2.60&Aring;
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|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Chain+A'>AC1</scene>
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|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> and <scene name='pdbligand=ADP:ADENOSINE-5'-DIPHOSPHATE'>ADP</scene>
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|ACTIVITY=
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|GENE=
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}}
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'''CRYSTAL STRUCTURE OF DHAL FROM E. COLI'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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2BTD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=ADP:'>ADP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Chain+A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BTD OCA].
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2BTD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BTD OCA].
==Reference==
==Reference==
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Crystal structure of the nucleotide-binding subunit DhaL of the Escherichia coli dihydroxyacetone kinase., Oberholzer AE, Schneider P, Baumann U, Erni B, J Mol Biol. 2006 Jun 9;359(3):539-45. Epub 2006 Apr 18. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16647083 16647083]
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Crystal structure of the nucleotide-binding subunit DhaL of the Escherichia coli dihydroxyacetone kinase., Oberholzer AE, Schneider P, Baumann U, Erni B, J Mol Biol. 2006 Jun 9;359(3):539-45. Epub 2006 Apr 18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16647083 16647083]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: dhal]]
[[Category: dhal]]
[[Category: dihydroxiacetone kinase]]
[[Category: dihydroxiacetone kinase]]
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[[Category: pts]]
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[[Category: pt]]
[[Category: transferase]]
[[Category: transferase]]
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[[Category: ycgs]]
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[[Category: ycg]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:41:27 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:06:27 2008''

Revision as of 14:06, 20 March 2008

Image:2btd.gif


PDB ID 2btd

Drag the structure with the mouse to rotate
, resolution 2.60Å
Sites:
Ligands: and
Coordinates: save as pdb, mmCIF, xml



CRYSTAL STRUCTURE OF DHAL FROM E. COLI


Overview

Dihydroxyacetone (Dha) kinases are a family of sequence-related enzymes that utilize either ATP or phosphoenolpyruvate (PEP) as source of high energy phosphate. The PEP-dependent Dha kinase of Escherichia coli consists of three subunits. DhaK and DhaL are homologous to the Dha and nucleotide-binding domains of the ATP-dependent kinase of Citrobacter freundii. The DhaM subunit is a multiphosphorylprotein of the PEP:sugar phosphotransferase system (PTS). DhaL contains a tightly bound ADP as coenzyme that gets transiently phosphorylated in the double displacement of phosphate between DhaM and Dha. Here we report the 2.6A crystal structure of the E.coli DhaL subunit. DhaL folds into an eight-helix barrel of regular up-down topology with a hydrophobic core made up of eight interlocked aromatic residues and a molecule of ADP bound at the narrower end of the barrel. The alpha and beta phosphates of ADP are complexed by two Mg2+ and by a hydrogen bond to the imidazole ring of an invariant histidine. The Mg ions in turn are coordinated by three gamma-carboxyl groups of invariant aspartate residues. Water molecules complete the octahedral coordination sphere. The nucleotide is capped by an alpha-helical segment connecting helices 7 and 8 of the barrel. DhaL and the nucleotide-binding domain of the C.freundii kinase assume the same fold but display strongly different surface potentials. The latter observation and biochemical data indicate that the domains of the C.freundii Dha kinase constitute one cooperative unit and are not randomly interacting and independent like the subunits of the E.coli enzyme.

About this Structure

2BTD is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Crystal structure of the nucleotide-binding subunit DhaL of the Escherichia coli dihydroxyacetone kinase., Oberholzer AE, Schneider P, Baumann U, Erni B, J Mol Biol. 2006 Jun 9;359(3):539-45. Epub 2006 Apr 18. PMID:16647083

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