3i9s
From Proteopedia
(Difference between revisions)
m (Protected "3i9s" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Structure from the mobile metagenome of V.cholerae. Integron cassette protein VCH_CASS6== | |
| - | + | <StructureSection load='3i9s' size='340' side='right' caption='[[3i9s]], [[Resolution|resolution]] 2.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3i9s]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I9S FirstGlance]. <br> |
| - | [[3i9s]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9S OCA]. | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">A59_A0465 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i9s RCSB], [http://www.ebi.ac.uk/pdbsum/3i9s PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9s_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Vibrio cholerae]] | [[Category: Vibrio cholerae]] | ||
| - | [[Category: Boucher, Y | + | [[Category: Boucher, Y]] |
| - | [[Category: Chang, C | + | [[Category: Chang, C]] |
| - | [[Category: Cui, H | + | [[Category: Cui, H]] |
| - | [[Category: Curmi, P M.G | + | [[Category: Curmi, P M.G]] |
| - | [[Category: Deshpande, C N | + | [[Category: Deshpande, C N]] |
| - | [[Category: Edwards, A | + | [[Category: Edwards, A]] |
| - | [[Category: Harrop, S J | + | [[Category: Harrop, S J]] |
| - | [[Category: Joachimiak, A | + | [[Category: Joachimiak, A]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Mabbutt, B C | + | [[Category: Mabbutt, B C]] |
| - | [[Category: Savchenko, A | + | [[Category: Savchenko, A]] |
| - | [[Category: Stokes, H W | + | [[Category: Stokes, H W]] |
| - | [[Category: Sureshan, V | + | [[Category: Sureshan, V]] |
| - | [[Category: Xu, X | + | [[Category: Xu, X]] |
[[Category: Acetyltransferase]] | [[Category: Acetyltransferase]] | ||
[[Category: Integron cassette protein]] | [[Category: Integron cassette protein]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Oyster pond]] | [[Category: Oyster pond]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
| - | [[Category: Vibrio cholerae]] | ||
[[Category: Woods hole]] | [[Category: Woods hole]] | ||
Revision as of 06:29, 18 December 2014
Structure from the mobile metagenome of V.cholerae. Integron cassette protein VCH_CASS6
| |||||||||||
Categories: Vibrio cholerae | Boucher, Y | Chang, C | Cui, H | Curmi, P M.G | Deshpande, C N | Edwards, A | Harrop, S J | Joachimiak, A | Structural genomic | Mabbutt, B C | Savchenko, A | Stokes, H W | Sureshan, V | Xu, X | Acetyltransferase | Integron cassette protein | Mcsg | Oyster pond | PSI, Protein structure initiative | Transferase | Woods hole
