2c1g
From Proteopedia
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| - | [[Image:2c1g.gif|left|200px]] | + | [[Image:2c1g.gif|left|200px]] |
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| - | '''STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PEPTIDOGLYCAN DEACETYLASE (SPPGDA)''' | + | {{Structure |
| + | |PDB= 2c1g |SIZE=350|CAPTION= <scene name='initialview01'>2c1g</scene>, resolution 1.75Å | ||
| + | |SITE= <scene name='pdbsite=AC1:Peg+Binding+Site+For+Chain+A'>AC1</scene> | ||
| + | |LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> and <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/N-acetylglucosamine_deacetylase N-acetylglucosamine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.33 3.5.1.33] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PEPTIDOGLYCAN DEACETYLASE (SPPGDA)''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2C1G is a [ | + | 2C1G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C1G OCA]. |
==Reference== | ==Reference== | ||
| - | Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor., Blair DE, Schuttelkopf AW, MacRae JI, van Aalten DM, Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15429-34. Epub 2005 Oct 12. PMID:[http:// | + | Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor., Blair DE, Schuttelkopf AW, MacRae JI, van Aalten DM, Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15429-34. Epub 2005 Oct 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16221761 16221761] |
[[Category: N-acetylglucosamine deacetylase]] | [[Category: N-acetylglucosamine deacetylase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: peptidoglycan deacetylase]] | [[Category: peptidoglycan deacetylase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:09:31 2008'' |
Revision as of 14:09, 20 March 2008
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| , resolution 1.75Å | |||||||
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| Sites: | |||||||
| Ligands: | , and | ||||||
| Activity: | N-acetylglucosamine deacetylase, with EC number 3.5.1.33 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PEPTIDOGLYCAN DEACETYLASE (SPPGDA)
Overview
Streptococcus pneumoniae peptidoglycan GlcNAc deacetylase (SpPgdA) protects the Gram-positive bacterial cell wall from host lysozymes by deacetylating peptidoglycan GlcNAc residues. Deletion of the pgda gene has been shown to result in hypersensitivity to lysozyme and reduction of infectivity in a mouse model. SpPgdA is a member of the family 4 carbohydrate esterases, for which little structural information exists, and no catalytic mechanism has yet been defined. Here we describe the native crystal structure and product complexes of SpPgdA biochemical characterization and mutagenesis. The structural data show that SpPgdA is an elongated three-domain protein in the crystal. The structure, in combination with mutagenesis, shows that SpPgdA is a metalloenzyme using a His-His-Asp zinc-binding triad with a nearby aspartic acid and histidine acting as the catalytic base and acid, respectively, somewhat similar to other zinc deacetylases such as LpxC. The enzyme is able to accept GlcNAc(3) as a substrate (K(m) = 3.8 mM, k(cat) = 0.55 s(-1)), with the N-acetyl of the middle sugar being removed by the enzyme. The data described here show that SpPgdA and the other family 4 carbohydrate esterases are metalloenzymes and present a step toward identification of mechanism-based inhibitors for this important class of enzymes.
About this Structure
2C1G is a Single protein structure of sequence from Streptococcus pneumoniae. Full crystallographic information is available from OCA.
Reference
Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor., Blair DE, Schuttelkopf AW, MacRae JI, van Aalten DM, Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15429-34. Epub 2005 Oct 12. PMID:16221761
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