2vh6

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{{STRUCTURE_2vh6| PDB=2vh6 | SCENE= }}
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==STRUCTURE AND PROPERTY BASED DESIGN OF FACTOR XA INHIBITORS: PYRROLIDIN-2-ONES WITH BIARYL P4 MOTIFS==
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===STRUCTURE AND PROPERTY BASED DESIGN OF FACTOR XA INHIBITORS: PYRROLIDIN-2-ONES WITH BIARYL P4 MOTIFS===
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<StructureSection load='2vh6' size='340' side='right' caption='[[2vh6]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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{{ABSTRACT_PUBMED_18054228}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2vh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VH6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VH6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSV:2-(5-CHLOROTHIOPHEN-2-YL)-N-{(3S)-1-[3-FLUORO-2-(METHYLSULFONYL)BIPHENYL-4-YL]-2-OXOPYRROLIDIN-3-YL}ETHANESULFONAMIDE'>GSV</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2j34|2j34]], [[1wu1|1wu1]], [[2bq7|2bq7]], [[1ioe|1ioe]], [[1f0s|1f0s]], [[1nfw|1nfw]], [[1xka|1xka]], [[2gd4|2gd4]], [[1f0r|1f0r]], [[1msx|1msx]], [[1lpg|1lpg]], [[1p0s|1p0s]], [[2g00|2g00]], [[2bmg|2bmg]], [[1mq5|1mq5]], [[1iqn|1iqn]], [[1mq6|1mq6]], [[1xkb|1xkb]], [[2bqw|2bqw]], [[1iqm|1iqm]], [[1ezq|1ezq]], [[1iqe|1iqe]], [[1g2m|1g2m]], [[1fjs|1fjs]], [[2vh0|2vh0]], [[1lpk|1lpk]], [[2j4i|2j4i]], [[1nfy|1nfy]], [[2uwl|2uwl]], [[2bok|2bok]], [[1nfx|1nfx]], [[1lpz|1lpz]], [[1hcg|1hcg]], [[2j94|2j94]], [[1iqj|1iqj]], [[1z6e|1z6e]], [[2uwp|2uwp]], [[2j95|2j95]], [[2cji|2cji]], [[2j38|2j38]], [[2boh|2boh]], [[1g2l|1g2l]], [[1nfu|1nfu]], [[1iqi|1iqi]], [[2bq6|2bq6]], [[1fax|1fax]], [[1iqf|1iqf]], [[1nl8|1nl8]], [[1kye|1kye]], [[1iqg|1iqg]], [[1iqk|1iqk]], [[1iqh|1iqh]], [[1v3x|1v3x]], [[1lqd|1lqd]], [[2fzz|2fzz]], [[2j2u|2j2u]], [[2uwo|2uwo]], [[1ksn|1ksn]], [[1c5m|1c5m]], [[1iql|1iql]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coagulation_factor_Xa Coagulation factor Xa], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.6 3.4.21.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vh6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vh6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vh6 RCSB], [http://www.ebi.ac.uk/pdbsum/2vh6 PDBsum]</span></td></tr>
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</table>
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== Disease ==
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[[http://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[http://omim.org/entry/227600 227600]]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
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== Function ==
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[[http://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Structure and property based drug design was exploited in the synthesis of sulfonamidopyrrolidin-2-one-based factor Xa (fXa) inhibitors, incorporating biaryl P4 groups, producing highly potent inhibitors with encouraging oral pharmacokinetic profiles and significant but sub-optimal anticoagulant activities.
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==Disease==
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Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with biaryl P4 motifs.,Young RJ, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chan C, Charbaut M, Chung CW, Convery MA, Kelly HA, Paul King N, Kleanthous S, Mason AM, Pateman AJ, Patikis AN, Pinto IL, Pollard DR, Senger S, Shah GP, Toomey JR, Watson NS, Weston HE Bioorg Med Chem Lett. 2008 Jan 1;18(1):23-7. Epub 2007 Nov 17. PMID:18054228<ref>PMID:18054228</ref>
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[[http://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[http://omim.org/entry/227600 227600]]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref><ref>PMID:1973167</ref><ref>PMID:1985698</ref><ref>PMID:7669671</ref><ref>PMID:8529633</ref><ref>PMID:7860069</ref><ref>PMID:8845463</ref><ref>PMID:8910490</ref><ref>PMID:10468877</ref><ref>PMID:10746568</ref><ref>PMID:10739379</ref><ref>PMID:11248282</ref><ref>PMID:11728527</ref><ref>PMID:12945883</ref><ref>PMID:15650540</ref><ref>PMID:17393015</ref><ref>PMID:19135706</ref>
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==Function==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[http://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
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</div>
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==About this Structure==
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[[2vh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VH6 OCA].
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==See Also==
==See Also==
*[[Factor Xa|Factor Xa]]
*[[Factor Xa|Factor Xa]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018054228</ref><references group="xtra"/><references/>
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__TOC__
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</StructureSection>
[[Category: Coagulation factor Xa]]
[[Category: Coagulation factor Xa]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Borthwick, A D.]]
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[[Category: Borthwick, A D]]
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[[Category: Brown, D.]]
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[[Category: Brown, D]]
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[[Category: Burns-Kurtis, C L.]]
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[[Category: Burns-Kurtis, C L]]
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[[Category: Campbell, M.]]
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[[Category: Campbell, M]]
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[[Category: Chan, C.]]
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[[Category: Chan, C]]
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[[Category: Charbaut, M.]]
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[[Category: Charbaut, M]]
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[[Category: Chung, C W.]]
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[[Category: Chung, C W]]
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[[Category: Convery, M A.]]
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[[Category: Convery, M A]]
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[[Category: Kelly, H A.]]
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[[Category: Kelly, H A]]
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[[Category: King, N P.]]
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[[Category: King, N P]]
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[[Category: Kleanthous, S.]]
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[[Category: Kleanthous, S]]
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[[Category: Mason, A M.]]
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[[Category: Mason, A M]]
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[[Category: Pateman, A J.]]
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[[Category: Pateman, A J]]
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[[Category: Patikis, A N.]]
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[[Category: Patikis, A N]]
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[[Category: Pinto, I L.]]
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[[Category: Pinto, I L]]
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[[Category: Pollard, D R.]]
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[[Category: Pollard, D R]]
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[[Category: Senger, S.]]
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[[Category: Senger, S]]
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[[Category: Shah, G P.]]
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[[Category: Shah, G P]]
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[[Category: Toomey, J R.]]
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[[Category: Toomey, J R]]
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[[Category: Watson, N S.]]
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[[Category: Watson, N S]]
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[[Category: Weston, H E.]]
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[[Category: Weston, H E]]
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[[Category: Young, R J.]]
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[[Category: Young, R J]]
[[Category: Blood coagulation]]
[[Category: Blood coagulation]]
[[Category: Cleavage on pair of basic residue]]
[[Category: Cleavage on pair of basic residue]]

Revision as of 12:30, 18 December 2014

STRUCTURE AND PROPERTY BASED DESIGN OF FACTOR XA INHIBITORS: PYRROLIDIN-2-ONES WITH BIARYL P4 MOTIFS

2vh6, resolution 1.95Å

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