3tv3

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{{STRUCTURE_3tv3| PDB=3tv3 | SCENE= }}
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==Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9==
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===Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9===
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<StructureSection load='3tv3' size='340' side='right' caption='[[3tv3]], [[Resolution|resolution]] 1.29&Aring;' scene=''>
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{{ABSTRACT_PUBMED_21998254}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3tv3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TV3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TV3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AML:AMYLAMINE'>AML</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IGLC2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tv3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tv3 RCSB], [http://www.ebi.ac.uk/pdbsum/3tv3 PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The HIV envelope (Env) protein gp120 is protected from antibody recognition by a dense glycan shield. However, several of the recently identified PGT broadly neutralizing antibodies appear to interact directly with the HIV glycan coat. Crystal structures of Fabs PGT 127 and 128 with Man(9) at 1.65 and 1.29 A resolution, respectively, and glycan binding data delineate a specific high mannose binding site. Fab PGT 128 complexed with a fully glycosylated gp120 outer domain at 3.25 A reveals that the antibody penetrates the glycan shield and recognizes two conserved glycans as well as a short beta-strand segment of the gp120 V3 loop, accounting for its high binding affinity and broad specificify. Furthermore, our data suggest that the high neutralization potency of PGT 127 and 128 IgGs may be mediated by cross-linking Env trimers on the viral surface.
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==About this Structure==
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A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield.,Pejchal R, Doores KJ, Walker LM, Khayat R, Huang PS, Wang SK, Stanfield RL, Julien JP, Ramos A, Crispin M, Depetris R, Katpally U, Marozsan A, Cupo A, Maloveste S, Liu Y, McBride R, Ito Y, Sanders RW, Ogohara C, Paulson JC, Feizi T, Scanlan CN, Wong CH, Moore JP, Olson WC, Ward AB, Poignard P, Schief WR, Burton DR, Wilson IA Science. 2011 Oct 13. PMID:21998254<ref>PMID:21998254</ref>
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[[3tv3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TV3 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:021998254</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Pejchal, R.]]
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[[Category: Pejchal, R]]
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[[Category: Wilson, I A.]]
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[[Category: Wilson, I A]]
[[Category: Fab]]
[[Category: Fab]]
[[Category: Gp120]]
[[Category: Gp120]]
[[Category: Hiv-1 neutralizing antibody]]
[[Category: Hiv-1 neutralizing antibody]]
[[Category: Immune system]]
[[Category: Immune system]]

Revision as of 07:03, 21 December 2014

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9

3tv3, resolution 1.29Å

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