This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kw2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3kw2" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3kw2| PDB=3kw2 | SCENE= }}
+
==Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis==
-
===Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis===
+
<StructureSection load='3kw2' size='340' side='right' caption='[[3kw2]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Function==
+
<table><tr><td colspan='2'>[[3kw2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_atcc_33277 Porphyromonas gingivalis atcc 33277]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KW2 FirstGlance]. <br>
-
[[http://www.uniprot.org/uniprot/B2RH75_PORG3 B2RH75_PORG3]] Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity).[PIRNR:PIRNR015601]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene></td></tr>
-
 
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PGN_0201 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=431947 Porphyromonas gingivalis ATCC 33277])</td></tr>
-
[[3kw2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_atcc_33277 Porphyromonas gingivalis atcc 33277]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KW2 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kw2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kw2 RCSB], [http://www.ebi.ac.uk/pdbsum/3kw2 PDBsum]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/3kw2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Porphyromonas gingivalis atcc 33277]]
[[Category: Porphyromonas gingivalis atcc 33277]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo, S C]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley, S K]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
-
[[Category: Ramagopal, U A.]]
+
-
[[Category: Toro, R.]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Ramagopal, U A]]
 +
[[Category: Toro, R]]
 +
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]
[[Category: Transferase]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Revision as of 12:48, 6 November 2014

Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis

3kw2, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools