3lyf

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{{STRUCTURE_3lyf| PDB=3lyf | SCENE= }}
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==Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein==
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===Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein===
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<StructureSection load='3lyf' size='340' side='right' caption='[[3lyf]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
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{{ABSTRACT_PUBMED_20547879}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3lyf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rift_valley_fever_virus Rift valley fever virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LYF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">N ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11588 Rift Valley fever virus])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lyf RCSB], [http://www.ebi.ac.uk/pdbsum/3lyf PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Rift Valley fever virus (RVFV) is a negative-sense RNA virus (genus Phlebovirus, family Bunyaviridae) that infects livestock and humans and is endemic to sub-Saharan Africa. Like all negative-sense viruses, the segmented RNA genome of RVFV is encapsidated by a nucleocapsid protein (N). The 1.93-A crystal structure of RVFV N and electron micrographs of ribonucleoprotein (RNP) reveal an encapsidated genome of substantially different organization than in other negative-sense RNA virus families. The RNP polymer, viewed in electron micrographs of both virus RNP and RNP reconstituted from purified N with a defined RNA, has an extended structure without helical symmetry. N-RNA species of approximately 100-kDa apparent molecular weight and heterogeneous composition were obtained by exhaustive ribonuclease treatment of virus RNP, by recombinant expression of N, and by reconstitution from purified N and an RNA oligomer. RNA-free N, obtained by denaturation and refolding, has a novel all-helical fold that is compact and well ordered at both the N and C termini. Unlike N of other negative-sense RNA viruses, RVFV N has no positively charged surface cleft for RNA binding and no protruding termini or loops to stabilize a defined N-RNA oligomer or RNP helix. A potential protein interaction site was identified in a conserved hydrophobic pocket. The nonhelical appearance of phlebovirus RNP, the heterogeneous approximately 100-kDa N-RNA multimer, and the N fold differ substantially from the RNP and N of other negative-sense RNA virus families and provide valuable insights into the structure of the encapsidated phlebovirus genome.
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==About this Structure==
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Structure of the Rift Valley fever virus nucleocapsid protein reveals another architecture for RNA encapsidation.,Raymond DD, Piper ME, Gerrard SR, Smith JL Proc Natl Acad Sci U S A. 2010 Jun 14. PMID:20547879<ref>PMID:20547879</ref>
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[[3lyf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rift_valley_fever_virus Rift valley fever virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYF OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:020547879</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Rift valley fever virus]]
[[Category: Rift valley fever virus]]
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[[Category: Raymond, D D.]]
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[[Category: Raymond, D D]]
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[[Category: Smith, J L.]]
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[[Category: Smith, J L]]
[[Category: N protein]]
[[Category: N protein]]
[[Category: Nucleocapsid protein]]
[[Category: Nucleocapsid protein]]
[[Category: Ribonucleoprotein]]
[[Category: Ribonucleoprotein]]
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[[Category: Rift valley fever virus]]
 
[[Category: Viral nucleoprotein]]
[[Category: Viral nucleoprotein]]
[[Category: Viral protein]]
[[Category: Viral protein]]

Revision as of 16:56, 18 December 2014

Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein

3lyf, resolution 1.93Å

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