3mkh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3mkh" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3mkh| PDB=3mkh | SCENE= }}
+
==Podospora anserina Nitroalkane Oxidase==
-
===Podospora anserina Nitroalkane Oxidase===
+
<StructureSection load='3mkh' size='340' side='right' caption='[[3mkh]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_20481475}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3mkh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Podospora_anserina Podospora anserina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MKH FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitroalkane_oxidase Nitroalkane oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.1 1.7.3.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mkh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mkh RCSB], [http://www.ebi.ac.uk/pdbsum/3mkh PDBsum]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/3mkh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The flavoprotein nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of primary and secondary nitroalkanes to their respective aldehydes and ketones. Structurally, the enzyme is a member of the acyl-CoA dehydrogenase superfamily. To date no enzymes other than that from F. oxysporum have been annotated as NAOs. To identify additional potential NAOs, the available database was searched for enzymes in which the active site residues Asp402, Arg409, and Ser276 were conserved. Of the several fungal enzymes identified in this fashion, PODANSg2158 from Podospora anserina was selected for expression and characterization. The recombinant enzyme is a flavoprotein with activity on nitroalkanes comparable to the F. oxysporum NAO, although the substrate specificity is somewhat different. Asp399, Arg406, and Ser273 in PODANSg2158 correspond to the active site triad in F. oxysporum NAO. The k(cat)/K(M)-pH profile with nitroethane shows a pK(a) of 5.9 that is assigned to Asp399 as the active site base. Mutation of Asp399 to asparagine decreases the k(cat)/K(M) value for nitroethane over 2 orders of magnitude. The R406K and S373A mutations decrease this kinetic parameter by 64- and 3-fold, respectively. The structure of PODANSg2158 has been determined at a resolution of 2.0 A, confirming its identification as an NAO.
-
==About this Structure==
+
Identification of a Hypothetical Protein from Podospora anserina as a Nitroalkane Oxidase.,Tormos JR, Taylor AB, Daubner SC, Hart PJ, Fitzpatrick PF Biochemistry. 2010 May 27. PMID:20481475<ref>PMID:20481475</ref>
-
[[3mkh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Podospora_anserina Podospora anserina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKH OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:020481475</ref><references group="xtra"/><references/>
+
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Nitroalkane oxidase]]
[[Category: Nitroalkane oxidase]]
[[Category: Podospora anserina]]
[[Category: Podospora anserina]]
-
[[Category: Daubner, S C.]]
+
[[Category: Daubner, S C]]
-
[[Category: Fitzpatrick, P F.]]
+
[[Category: Fitzpatrick, P F]]
[[Category: Hart, P J]]
[[Category: Hart, P J]]
-
[[Category: Taylor, A B.]]
+
[[Category: Taylor, A B]]
-
[[Category: Tormos, J R.]]
+
[[Category: Tormos, J R]]
[[Category: Acyl-coa dehydrogenase]]
[[Category: Acyl-coa dehydrogenase]]
[[Category: Fad]]
[[Category: Fad]]

Revision as of 15:30, 18 December 2014

Podospora anserina Nitroalkane Oxidase

3mkh, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mkh"
Personal tools