This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3neh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3neh" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3neh| PDB=3neh | SCENE= }}
+
==Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala==
-
===Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala===
+
<StructureSection load='3neh' size='340' side='right' caption='[[3neh]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[3neh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NEH FirstGlance]. <br>
-
[[3neh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEH OCA].
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=L3A:(2R)-3-[(R)-[(1R)-1-AMINO-3-METHYLBUTYL](HYDROXY)PHOSPHORYL]-2-METHYLPROPANOIC+ACID'>L3A</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LMOf2365_2435 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 Listeria monocytogenes])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3neh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3neh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3neh RCSB], [http://www.ebi.ac.uk/pdbsum/3neh PDBsum]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ne/3neh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Ferrochelatase]]
[[Category: Ferrochelatase]]
[[Category: Listeria monocytogenes]]
[[Category: Listeria monocytogenes]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo, S C]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley, S K]]
-
[[Category: Cummings, J.]]
+
[[Category: Cummings, J]]
-
[[Category: Fedorov, A A.]]
+
[[Category: Fedorov, A A]]
-
[[Category: Fedorov, E V.]]
+
[[Category: Fedorov, E V]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Raushel, F M.]]
+
[[Category: Raushel, F M]]
[[Category: Dipeptide l-leu-d-ala]]
[[Category: Dipeptide l-leu-d-ala]]
[[Category: Lyase]]
[[Category: Lyase]]
-
[[Category: New york sgx research center for structural genomic]]
 
[[Category: Nysgrc]]
[[Category: Nysgrc]]
-
[[Category: Nysgxrc]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Revision as of 13:54, 6 November 2014

Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala

3neh, resolution 1.64Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools