4j9v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4j9v| PDB=4j9v | SCENE= }}
+
==Crystal Structure of the TrkA Gating ring bound to ATP-gamma-S==
-
===Crystal Structure of the TrkA Gating ring bound to ATP-gamma-S===
+
<StructureSection load='4j9v' size='340' side='right' caption='[[4j9v]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_23598339}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4j9v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J9V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4J9V FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4j9u|4j9u]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP3045 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4j9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j9v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4j9v RCSB], [http://www.ebi.ac.uk/pdbsum/4j9v PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
TrkH belongs to a superfamily of K(+) transport proteins required for growth of bacteria in low external K(+) concentrations. The crystal structure of TrkH from Vibrio parahaemolyticus showed that TrkH resembles a K(+) channel and may have a gating mechanism substantially different from K(+) channels. TrkH assembles with TrkA, a cytosolic protein comprising two RCK (regulate the conductance of K(+)) domains, which are found in certain K(+) channels and control their gating. However, fundamental questions on whether TrkH is an ion channel and how it is regulated by TrkA remain unresolved. Here we show single-channel activity of TrkH that is upregulated by ATP via TrkA. We report two structures of the tetrameric TrkA ring, one in complex with TrkH and one in isolation, in which the ring assumes two markedly different conformations. These results suggest a mechanism for how ATP increases TrkH activity by inducing conformational changes in TrkA.
-
==About this Structure==
+
Gating of the TrkH ion channel by its associated RCK protein TrkA.,Cao Y, Pan Y, Huang H, Jin X, Levin EJ, Kloss B, Zhou M Nature. 2013 Apr 18;496(7445):317-22. doi: 10.1038/nature12056. PMID:23598339<ref>PMID:23598339</ref>
-
[[4j9v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J9V OCA].
+
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]
-
[[Category: Cao, Y.]]
+
[[Category: Cao, Y]]
-
[[Category: Huang, H.]]
+
[[Category: Huang, H]]
-
[[Category: Jin, X..]]
+
[[Category: Jin, X]]
-
[[Category: Levin, E J..]]
+
[[Category: Levin, E J]]
-
[[Category: NYCOMPS, New York Consortium on Membrane Protein Structure.]]
+
[[Category: NYCOMPS, New York Consortium on Membrane Protein Structure]]
-
[[Category: Zhou, M.]]
+
[[Category: Zhou, M]]
[[Category: New york consortium on membrane protein structure]]
[[Category: New york consortium on membrane protein structure]]
[[Category: Nucleotide binding]]
[[Category: Nucleotide binding]]

Revision as of 12:08, 21 December 2014

Crystal Structure of the TrkA Gating ring bound to ATP-gamma-S

4j9v, resolution 3.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools