2flo
From Proteopedia
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| - | [[Image:2flo.gif|left|200px]] | + | [[Image:2flo.gif|left|200px]] |
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| - | '''Crystal structure of exopolyphosphatase (PPX) from E. coli O157:H7''' | + | {{Structure |
| + | |PDB= 2flo |SIZE=350|CAPTION= <scene name='initialview01'>2flo</scene>, resolution 2.20Å | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Exopolyphosphatase Exopolyphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.11 3.6.1.11] | ||
| + | |GENE= ppx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
| + | }} | ||
| + | |||
| + | '''Crystal structure of exopolyphosphatase (PPX) from E. coli O157:H7''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2FLO is a [ | + | 2FLO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FLO OCA]. |
==Reference== | ==Reference== | ||
| - | The structure of the exopolyphosphatase (PPX) from Escherichia coli O157:H7 suggests a binding mode for long polyphosphate chains., Rangarajan ES, Nadeau G, Li Y, Wagner J, Hung MN, Schrag JD, Cygler M, Matte A, J Mol Biol. 2006 Jun 23;359(5):1249-60. Epub 2006 Apr 27. PMID:[http:// | + | The structure of the exopolyphosphatase (PPX) from Escherichia coli O157:H7 suggests a binding mode for long polyphosphate chains., Rangarajan ES, Nadeau G, Li Y, Wagner J, Hung MN, Schrag JD, Cygler M, Matte A, J Mol Biol. 2006 Jun 23;359(5):1249-60. Epub 2006 Apr 27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16678853 16678853] |
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Exopolyphosphatase]] | [[Category: Exopolyphosphatase]] | ||
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[[Category: Matte, A.]] | [[Category: Matte, A.]] | ||
[[Category: Rangarajan, E S.]] | [[Category: Rangarajan, E S.]] | ||
| - | [[Category: bacterial structural | + | [[Category: bacterial structural genomic]] |
[[Category: bsgi]] | [[Category: bsgi]] | ||
[[Category: exopolyphosphatase]] | [[Category: exopolyphosphatase]] | ||
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[[Category: montreal-kingston bacterial structural genomics initiative]] | [[Category: montreal-kingston bacterial structural genomics initiative]] | ||
[[Category: ppx/gppa]] | [[Category: ppx/gppa]] | ||
| - | [[Category: structural | + | [[Category: structural genomic]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:54:00 2008'' |
Revision as of 14:54, 20 March 2008
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| , resolution 2.20Å | |||||||
|---|---|---|---|---|---|---|---|
| Gene: | ppx (Escherichia coli) | ||||||
| Activity: | Exopolyphosphatase, with EC number 3.6.1.11 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of exopolyphosphatase (PPX) from E. coli O157:H7
Overview
Polyphosphate (polyP) is a linear polymer consisting of tens to hundreds of phosphate molecules joined together by high-energy anhydride bonds. These polymers are found in virtually all prokaryotic and eukaryotic cells and perform many functions; prominent among them are the responses to many stresses. Polyphosphate is synthesized by polyP kinase (PPK), using the terminal phosphate of ATP as the substrate, and degraded to inorganic phosphate by both endo- and exopolyphosphatases. Here we report the crystal structure and analysis of the polyphosphate phosphatase PPX from Escherichia coli O157:H7 refined at 2.2 Angstroms resolution. PPX is made of four domains. Domains I and II display structural similarity with one another and share the ribonuclease-H-like fold. Domain III bears structural similarity to the N-terminal, HD domain of SpoT. Domain IV, the smallest domain, has structural counterparts in cold-shock associated RNA-binding proteins but is of unknown function in PPX. The putative PPX active site is located at the interface between domains I and II. In the crystal structure of PPX these two domains are close together and represent the "closed" state. Comparison with the crystal structure of PPX/GPPA from Aquifex aeolicus reveals close structural similarity between domains I and II of the two enzymes, with the PPX/GPPA representing an "open" state. A striking feature of the dimer is a deep S-shaped canyon extending along the dimer interface and lined with positively charged residues. The active site region opens to this canyon. We postulate that this is a likely site of polyP binding.
About this Structure
2FLO is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
The structure of the exopolyphosphatase (PPX) from Escherichia coli O157:H7 suggests a binding mode for long polyphosphate chains., Rangarajan ES, Nadeau G, Li Y, Wagner J, Hung MN, Schrag JD, Cygler M, Matte A, J Mol Biol. 2006 Jun 23;359(5):1249-60. Epub 2006 Apr 27. PMID:16678853
Page seeded by OCA on Thu Mar 20 16:54:00 2008
Categories: Escherichia coli | Exopolyphosphatase | Single protein | BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative. | Cygler, M. | Matte, A. | Rangarajan, E S. | Bacterial structural genomic | Bsgi | Metaphosphatase | Montreal-kingston bacterial structural genomics initiative | Ppx/gppa | Structural genomic
