This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qp1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_3qp1| PDB=3qp1 | SCENE= }}
+
==Crystal structure of CviR ligand-binding domain bound to the native ligand C6-HSL==
-
===Crystal structure of CviR ligand-binding domain bound to the native ligand C6-HSL===
+
<StructureSection load='3qp1' size='340' side='right' caption='[[3qp1]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_21504831}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3qp1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QP1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QP1 FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HL6:N-[(3S)-2-OXOTETRAHYDROFURAN-3-YL]HEXANAMIDE'>HL6</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3qp2|3qp2]], [[3qp4|3qp4]], [[3qp5|3qp5]], [[3qp6|3qp6]], [[3qp7|3qp7]], [[3qp8|3qp8]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cviR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qp1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qp1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qp1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qp1 PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Quorum-sensing bacteria communicate via small molecules called autoinducers to coordinate collective behaviors. Because quorum sensing controls virulence factor expression in many clinically relevant pathogens, membrane-permeable quorum sensing antagonists that prevent population-wide expression of virulence genes offer a potential route to novel antibacterial therapeutics. Here, we report a strategy for inhibiting quorum-sensing receptors of the widespread LuxR family. Structure-function studies with natural and synthetic ligands demonstrate that the dimeric LuxR-type transcription factor CviR from Chromobacterium violaceum is potently antagonized by molecules that bind in place of the native acylated homoserine lactone autoinducer, provided that they stabilize a closed conformation. In such conformations, each of the two DNA-binding domains interacts with the ligand-binding domain of the opposing monomer. Consequently, the DNA-binding helices are held apart by approximately 60 A, twice the approximately 30 A separation required for operator binding. This approach may represent a general strategy for the inhibition of multidomain proteins.
-
==About this Structure==
+
A strategy for antagonizing quorum sensing.,Chen G, Swem LR, Swem DL, Stauff DL, O'Loughlin CT, Jeffrey PD, Bassler BL, Hughson FM Mol Cell. 2011 Apr 22;42(2):199-209. PMID:21504831<ref>PMID:21504831</ref>
-
[[3qp1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QP1 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:021504831</ref><references group="xtra"/><references/>
+
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Chromobacterium violaceum]]
[[Category: Chromobacterium violaceum]]
-
[[Category: Bassler, B.]]
+
[[Category: Bassler, B]]
-
[[Category: Chen, G.]]
+
[[Category: Chen, G]]
-
[[Category: Hughson, F.]]
+
[[Category: Hughson, F]]
-
[[Category: Jeffrey, P.]]
+
[[Category: Jeffrey, P]]
-
[[Category: Loughlin, C O.]]
+
[[Category: Loughlin, C O]]
-
[[Category: Stauff, D.]]
+
[[Category: Stauff, D]]
-
[[Category: Swem, D.]]
+
[[Category: Swem, D]]
-
[[Category: Swem, L.]]
+
[[Category: Swem, L]]
[[Category: Acylated homoserine lactone]]
[[Category: Acylated homoserine lactone]]
[[Category: Agonist]]
[[Category: Agonist]]

Revision as of 11:06, 19 December 2014

Crystal structure of CviR ligand-binding domain bound to the native ligand C6-HSL

3qp1, resolution 1.55Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools