2hpy
From Proteopedia
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| - | [[Image:2hpy.gif|left|200px]] | + | [[Image:2hpy.gif|left|200px]] |
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| - | '''Crystallographic model of lumirhodopsin''' | + | {{Structure |
| + | |PDB= 2hpy |SIZE=350|CAPTION= <scene name='initialview01'>2hpy</scene>, resolution 2.8Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene> and <scene name='pdbligand=HTG:HEPTYL 1-THIOHEXOPYRANOSIDE'>HTG</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Crystallographic model of lumirhodopsin''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2HPY is a [ | + | 2HPY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HPY OCA]. |
==Reference== | ==Reference== | ||
| - | Local peptide movement in the photoreaction intermediate of rhodopsin., Nakamichi H, Okada T, Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12729-34. Epub 2006 Aug 14. PMID:[http:// | + | Local peptide movement in the photoreaction intermediate of rhodopsin., Nakamichi H, Okada T, Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12729-34. Epub 2006 Aug 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16908857 16908857] |
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: visual pigment]] | [[Category: visual pigment]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:20:02 2008'' |
Revision as of 15:20, 20 March 2008
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| , resolution 2.8Å | |||||||
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| Ligands: | , , , , , and | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystallographic model of lumirhodopsin
Overview
Photoactivation of the visual rhodopsin, a prototypical G protein-coupled receptor (GPCR), involves efficient conversion of the intrinsic inverse-agonist 11-cis-retinal to the all-trans agonist. This event leads to the rearrangement of the heptahelical transmembrane bundle, which is thought to be shared by hundreds of GPCRs. To examine this activation mechanism, we determined the x-ray crystallographic model of the photoreaction intermediate of rhodopsin, lumirhodopsin, which represents the conformational state having the nearly complete all-trans agonist form of the retinal. A difference electron density map clearly indicated that the distorted all-trans-retinal in the precedent intermediate bathorhodopsin relaxes by dislocation of the beta-ionone ring in lumirhodopsin, along with significant peptide displacement in the middle of helix III, including approximately two helical turns. This local movement results in the breaking of the electrostatic interhelical restraints mediated by many of the conserved residues among rhodopsin-like GPCRs, with consequent acquisition of full activity.
About this Structure
2HPY is a Single protein structure of sequence from Bos taurus. Full crystallographic information is available from OCA.
Reference
Local peptide movement in the photoreaction intermediate of rhodopsin., Nakamichi H, Okada T, Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12729-34. Epub 2006 Aug 14. PMID:16908857
Page seeded by OCA on Thu Mar 20 17:20:02 2008
Categories: Bos taurus | Single protein | Nakamichi, H. | Okada, T. | ACE | HG | HTG | HTO | PLM | RET | ZN | G protein-coupled receptor | Visual pigment
