4jkp

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{{STRUCTURE_4jkp| PDB=4jkp | SCENE= }}
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==Restricting HIV-1 Pathways for Escape using Rationally-Designed Anti-HIV-1 Antibodies==
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===Restricting HIV-1 Pathways for Escape using Rationally-Designed Anti-HIV-1 Antibodies===
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<StructureSection load='4jkp' size='340' side='right' caption='[[4jkp]], [[Resolution|resolution]] 2.82&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23712429}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4jkp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JKP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JKP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jkp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jkp RCSB], [http://www.ebi.ac.uk/pdbsum/4jkp PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recently identified broadly neutralizing antibodies (bNAbs) that potently neutralize most HIV-1 strains are key to potential antibody-based therapeutic approaches to combat HIV/AIDS in the absence of an effective vaccine. Increasing bNAb potencies and resistance to common routes of HIV-1 escape through mutation would facilitate their use as therapeutics. We previously used structure-based design to create the bNAb NIH45-46(G54W), which exhibits superior potency and/or breadth compared with other bNAbs. We report new, more effective NIH45-46(G54W) variants designed using analyses of the NIH45-46-gp120 complex structure and sequences of NIH45-46(G54W)-resistant HIV-1 strains. One variant, 45-46m2, neutralizes 96% of HIV-1 strains in a cross-clade panel and viruses isolated from an HIV-infected individual that are resistant to all other known bNAbs, making it the single most broad and potent anti-HIV-1 antibody to date. A description of its mechanism is presented based on a 45-46m2-gp120 crystal structure. A second variant, 45-46m7, designed to thwart HIV-1 resistance to NIH45-46(G54W) arising from mutations in a gp120 consensus sequence, targets a common route of HIV-1 escape. In combination, 45-46m2 and 45-46m7 reduce the possible routes for the evolution of fit viral escape mutants in HIV-1YU-2-infected humanized mice, with viremic control exhibited when a third antibody, 10-1074, was added to the combination.
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==About this Structure==
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Restricting HIV-1 pathways for escape using rationally designed anti-HIV-1 antibodies.,Diskin R, Klein F, Horwitz JA, Halper-Stromberg A, Sather DN, Marcovecchio PM, Lee T, West AP Jr, Gao H, Seaman MS, Stamatatos L, Nussenzweig MC, Bjorkman PJ J Exp Med. 2013 Jun 3;210(6):1235-49. doi: 10.1084/jem.20130221. Epub 2013 May, 27. PMID:23712429<ref>PMID:23712429</ref>
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[[4jkp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JKP OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023712429</ref><references group="xtra"/><references/>
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</div>
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==See Also==
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*[[Antibody|Antibody]]
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*[[Gp120|Gp120]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
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[[Category: Bjorkman, P J.]]
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[[Category: Bjorkman, P J]]
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[[Category: Diskin, R.]]
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[[Category: Diskin, R]]
[[Category: Antibody]]
[[Category: Antibody]]
[[Category: Gp120]]
[[Category: Gp120]]
[[Category: Igg]]
[[Category: Igg]]
[[Category: Viral protein-immune system complex]]
[[Category: Viral protein-immune system complex]]

Revision as of 15:26, 21 December 2014

Restricting HIV-1 Pathways for Escape using Rationally-Designed Anti-HIV-1 Antibodies

4jkp, resolution 2.82Å

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