2jtz
From Proteopedia
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| - | [[Image:2jtz.jpg|left|200px]] | + | [[Image:2jtz.jpg|left|200px]] |
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| - | '''Solution structure and chemical shift assignments of the F104-to-5-flurotryptophan mutant of cardiac troponin C''' | + | {{Structure |
| + | |PDB= 2jtz |SIZE=350|CAPTION= <scene name='initialview01'>2jtz</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= TNNC1, TNNC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) | ||
| + | }} | ||
| + | |||
| + | '''Solution structure and chemical shift assignments of the F104-to-5-flurotryptophan mutant of cardiac troponin C''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==Disease== | ==Disease== | ||
| - | Known diseases associated with this structure: Cardiomyopathy, familial hypertrophic, 192600 (3) OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=191040 191040]] | + | Known diseases associated with this structure: Cardiomyopathy, dilated, 1Z OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=191040 191040]], Cardiomyopathy, familial hypertrophic, 192600 (3) OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=191040 191040]] |
==About this Structure== | ==About this Structure== | ||
| - | 2JTZ is a [ | + | 2JTZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTZ OCA]. |
==Reference== | ==Reference== | ||
| - | Effects of Phe-to-Trp mutation and fluorotryptophan incorporation on the solution structure of cardiac troponin C, and analysis of its suitability as a potential probe for in situ NMR studies., Wang X, Mercier P, Letourneau PJ, Sykes BD, Protein Sci. 2005 Sep;14(9):2447-60. PMID:[http:// | + | Effects of Phe-to-Trp mutation and fluorotryptophan incorporation on the solution structure of cardiac troponin C, and analysis of its suitability as a potential probe for in situ NMR studies., Wang X, Mercier P, Letourneau PJ, Sykes BD, Protein Sci. 2005 Sep;14(9):2447-60. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16131667 16131667] |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: polymorphism]] | [[Category: polymorphism]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:45:04 2008'' |
Revision as of 15:45, 20 March 2008
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| Gene: | TNNC1, TNNC (Homo sapiens) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Solution structure and chemical shift assignments of the F104-to-5-flurotryptophan mutant of cardiac troponin C
Contents |
Overview
19F NMR spectroscopy is potentially a powerful tool for probing protein properties in situ. However, results obtained using this technique are relevant only if the 19F probe offers minimal perturbation to the surrounding environment. In this paper, we examine the effect of 5-fluorotryptophan (5fW) incorporation on the three-dimensional structure of cardiac troponin-C (cTnC), with the intention of developing a 19F-labeled TnC for use in in situ 19FNMR. We find that, in general, 5fW does not perturb the structure of the protein significantly. Replacement of residue Phe 153 with 5fW produces no noticeable change in protein conformation. However, replacement of residue Phe 104 with 5fW produces a folding behavior that is dependent on the Escherichia coli strain used to express the mutant. The orientations of the indole rings in these mutants are such that the Trp residue adopts a chi2 of approximately 90 degrees in the F104W mutant and approximately -100 degrees in the F153W mutant. Using results from 19F-1H heteronuclear NOE experiment, we show the replacement of L-Trp with 5fW at these positions does not change the orientation of the indole ring and the spread of the 5fW side-chain dihedral angles increases moderately for the F104(5fW) mutant and not at all for the F153(5fW) mutant. Based on these structures, we conclude that the substitution of Phe by 5fW at these two positions has minimal effects on the structure of cTnC and that the 5fW indole rings in both mutants have well defined orientation, making the two mutants viable candidates for use in in situ 19F NMR spectroscopy.
Disease
Known diseases associated with this structure: Cardiomyopathy, dilated, 1Z OMIM:[191040], Cardiomyopathy, familial hypertrophic, 192600 (3) OMIM:[191040]
About this Structure
2JTZ is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Effects of Phe-to-Trp mutation and fluorotryptophan incorporation on the solution structure of cardiac troponin C, and analysis of its suitability as a potential probe for in situ NMR studies., Wang X, Mercier P, Letourneau PJ, Sykes BD, Protein Sci. 2005 Sep;14(9):2447-60. PMID:16131667
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