This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2lu6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_2lu6| PDB=2lu6 | SCENE= }}
+
==NMR solution structure of Midi peptide designed based on m-conotoxins==
-
===NMR solution structure of Midi peptide designed based on m-conotoxins===
+
<StructureSection load='2lu6' size='340' side='right' caption='[[2lu6]], [[NMR_Ensembles_of_Models | 19 NMR models]]' scene=''>
-
{{ABSTRACT_PUBMED_22773842}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2lu6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LU6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LU6 FirstGlance]. <br>
 +
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lu6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lu6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lu6 RCSB], [http://www.ebi.ac.uk/pdbsum/2lu6 PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
To date, cone snail toxins ("conotoxins") are of great interest in the pursuit of novel subtype-selective modulators of voltage-gated sodium channels (Na(v)s). Na(v)s participate in a wide range of electrophysiological processes. Consequently, their malfunctioning has been associated with numerous diseases. The development of subtype-selective modulators of Na(v)s remains highly important in the treatment of such disorders. In current research, a series of novel, synthetic, and bioactive compounds were designed based on two naturally occurring mu-conotoxins that target Na(v)s. The initial designed peptide contains solely 13 amino acids and was therefore named "Mini peptide." It was derived from the mu-conotoxins KIIIA and BuIIIC. Based on this Mini peptide, 10 analogues were subsequently developed, comprising 12-16 amino acids with two disulfide bridges. Following appropriate folding and mass verification, blocking effects on Na(v)s were investigated. The most promising compound established an IC(50) of 34.1 +/- 0.01 nM (R2-Midi on Na(v)1.2). An NMR structure of one of our most promising compounds was determined. Surprisingly, this structure does not reveal an alpha-helix. We prove that it is possible to design small peptides based on known pharmacophores of mu-conotoxins without losing their potency and selectivity. These data can provide crucial material for further development of conotoxin-based therapeutics.
-
==About this Structure==
+
Design of bioactive peptides from naturally occurring mu-conotoxin structures.,Stevens M, Peigneur S, Dyubankova N, Lescrinier E, Herdewijn P, Tytgat J J Biol Chem. 2012 Sep 7;287(37):31382-92. doi: 10.1074/jbc.M112.375733. Epub 2012, Jul 6. PMID:22773842<ref>PMID:22773842</ref>
-
[[2lu6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LU6 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:022773842</ref><references group="xtra"/><references/>
+
</div>
-
[[Category: Dyubankova, N.]]
+
== References ==
-
[[Category: Herdewijn, P.]]
+
<references/>
-
[[Category: Lescrinier, E.]]
+
__TOC__
-
[[Category: Peigneur, S.]]
+
</StructureSection>
-
[[Category: Stevens, M.]]
+
[[Category: Dyubankova, N]]
-
[[Category: Tytgat, J.]]
+
[[Category: Herdewijn, P]]
 +
[[Category: Lescrinier, E]]
 +
[[Category: Peigneur, S]]
 +
[[Category: Stevens, M]]
 +
[[Category: Tytgat, J]]
[[Category: Buiiic]]
[[Category: Buiiic]]
[[Category: De novo protein]]
[[Category: De novo protein]]

Revision as of 11:32, 18 December 2014

NMR solution structure of Midi peptide designed based on m-conotoxins

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools